View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_153 (Length: 303)
Name: NF11324A_low_153
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_153 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 117 - 283
Target Start/End: Original strand, 32650608 - 32650774
Alignment:
| Q |
117 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
216 |
Q |
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| T |
32650608 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
32650707 |
T |
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| Q |
217 |
ccctgatccatttatcacggcgataatgcaaattaatgaaaggaaagagtaaacgaattgagatgct |
283 |
Q |
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| T |
32650708 |
ttctgatccattcatcacggccataatgaaaataaatgaaaggaaagagtaaacgaattgagatgct |
32650774 |
T |
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Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 12537299 - 12537407
Alignment:
| Q |
16 |
gacatcaaaccacaaatcctgagttaacatcagtttttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggc |
112 |
Q |
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| T |
12537299 |
gacatcataccaaaaaacctgagttgacatcagattttggcaactacttctcaaatgtgtggtaaaacttccttggaagaaagtaaacaacatcaggggc |
12537398 |
T |
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| Q |
113 |
gttaggaat |
121 |
Q |
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| T |
12537399 |
gttaggaat |
12537407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 29283 - 29175
Alignment:
| Q |
16 |
gacatcaaaccacaaatcctgagttaacatcagtttttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggc |
112 |
Q |
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||||||| |||| ||| |||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |
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| T |
29283 |
gacatcataccaaaaaacctgagttgacatcagattttggcaacgacttctcaaatgagtggtaaaacttccttggaagaaagtaaacaacatcaagggc |
29184 |
T |
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| Q |
113 |
gttaggaat |
121 |
Q |
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||||||||| |
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| T |
29183 |
gttaggaat |
29175 |
T |
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