View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_156 (Length: 302)

Name: NF11324A_low_156
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_156
NF11324A_low_156
[»] chr3 (19 HSPs)
chr3 (94-281)||(6785250-6785437)
chr3 (105-275)||(6797877-6798045)
chr3 (19-98)||(44269650-44269729)
chr3 (25-98)||(11258594-11258667)
chr3 (19-98)||(35065432-35065511)
chr3 (25-98)||(2842304-2842377)
chr3 (26-98)||(35353727-35353799)
chr3 (19-98)||(19884375-19884454)
chr3 (25-98)||(40811913-40811986)
chr3 (25-98)||(17519726-17519799)
chr3 (25-98)||(17534588-17534661)
chr3 (59-98)||(5215026-5215065)
chr3 (59-98)||(14508012-14508051)
chr3 (19-72)||(11258560-11258613)
chr3 (19-72)||(1208848-1208901)
chr3 (105-148)||(6940587-6940630)
chr3 (14-53)||(50756254-50756293)
chr3 (107-148)||(6774544-6774585)
chr3 (59-98)||(41173223-41173263)
[»] scaffold1662 (1 HSPs)
scaffold1662 (19-98)||(273-352)
[»] chr7 (6 HSPs)
chr7 (19-98)||(20585477-20585556)
chr7 (19-99)||(44374067-44374147)
chr7 (19-99)||(44382932-44383012)
chr7 (19-98)||(12466112-12466191)
chr7 (25-98)||(46386939-46387012)
chr7 (19-98)||(19282213-19282292)
[»] chr4 (6 HSPs)
chr4 (19-98)||(11425075-11425154)
chr4 (19-98)||(37018719-37018798)
chr4 (28-98)||(42874929-42874999)
chr4 (19-98)||(25090774-25090853)
chr4 (20-98)||(16997649-16997727)
chr4 (59-98)||(10357288-10357328)
[»] chr2 (6 HSPs)
chr2 (19-98)||(23969475-23969554)
chr2 (19-98)||(28653354-28653433)
chr2 (19-98)||(36839295-36839374)
chr2 (19-98)||(17306608-17306687)
chr2 (20-98)||(24515308-24515386)
chr2 (59-98)||(9975089-9975128)
[»] chr1 (5 HSPs)
chr1 (19-98)||(19675872-19675951)
chr1 (19-98)||(21046901-21046980)
chr1 (19-98)||(42912171-42912250)
chr1 (26-98)||(16059166-16059238)
chr1 (19-98)||(4596697-4596776)
[»] chr8 (3 HSPs)
chr8 (19-99)||(20179372-20179452)
chr8 (59-98)||(24713329-24713368)
chr8 (19-68)||(42818780-42818829)
[»] chr6 (5 HSPs)
chr6 (26-98)||(15891555-15891627)
chr6 (19-98)||(7825767-7825846)
chr6 (19-98)||(27126329-27126408)
chr6 (59-98)||(31733869-31733908)
chr6 (19-72)||(25920781-25920834)
[»] scaffold0146 (1 HSPs)
scaffold0146 (19-98)||(23517-23596)
[»] scaffold0111 (2 HSPs)
scaffold0111 (19-98)||(13386-13465)
scaffold0111 (19-98)||(19653-19732)
[»] scaffold1817 (1 HSPs)
scaffold1817 (19-98)||(249-327)
[»] chr5 (1 HSPs)
chr5 (31-98)||(19920767-19920834)
[»] scaffold0112 (1 HSPs)
scaffold0112 (19-75)||(1970-2026)
[»] scaffold0737 (1 HSPs)
scaffold0737 (59-98)||(5565-5604)
[»] scaffold0632 (1 HSPs)
scaffold0632 (59-98)||(327-365)
[»] scaffold0125 (1 HSPs)
scaffold0125 (26-72)||(27442-27488)
[»] scaffold0285 (1 HSPs)
scaffold0285 (19-71)||(18843-18894)
[»] scaffold0064 (1 HSPs)
scaffold0064 (59-98)||(57908-57948)
[»] scaffold0026 (1 HSPs)
scaffold0026 (59-98)||(145895-145935)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 94 - 281
Target Start/End: Original strand, 6785250 - 6785437
Alignment:
Q  94 ttaattcatataaatatattttactttgaaaaatgcagttgaatggcataataatgaaaaccatcgagataactttgcatcaagaactgaaggaaactag 193  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6785250 ttaaatcatataaatatattttactttgaaaaatgcagttgaatggcataataatgaaaaccatcgagataactttgcatcaagaactgaaggaaactag 6785349  T
Q  194 ggaattgatccttcacattctaacccagaatatgaaccagacattctcatgttgttgagttttgctttcgaacatagtatgtgtccat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6785350 ggaattgatccttcacattctaacccagaatatgaaccagacattctcatgttgttgagttttgctttcaaacatagtatgtgtccat 6785437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 105 - 275
Target Start/End: Original strand, 6797877 - 6798045
Alignment:
Q  105 aaatatattttactttgaaaaatgcagttgaatggcataataatgaaaaccatcgagataactttgcatcaagaactgaaggaaactagggaattgatcc 204  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |  |  ||||||||||| ||||| | ||||| | |||||||    
T  6797877 aaatatattttactttgaaaaattcagttgaatcgcataattatgaaaaccatcgagaca--tcggcatcaagaaccgaagggatctaggtagttgatcc 6797974  T
Q  205 ttcacattctaacccagaatatgaaccagacattctcatgttgttgagttttgctttcgaacatagtatgt 275  Q
    || |||||||||  ||||||||||| | ||||| || |||    |||||||| ||||| ||||||||||||    
T  6797975 tttacattctaatgcagaatatgaagctgacatgcttatgccaatgagttttactttcaaacatagtatgt 6798045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 44269650 - 44269729
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  44269650 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 44269729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 11258594 - 11258667
Alignment:
Q  25 caacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  11258594 caacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 11258667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 35065511 - 35065432
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| |||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  35065511 catcgacaacaacttataactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 35065432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 2842377 - 2842304
Alignment:
Q  25 caacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||    
T  2842377 caacaacttacaactttaacgacatggacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 2842304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 35353727 - 35353799
Alignment:
Q  26 aacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  35353727 aacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatacaacttaat 35353799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 19884454 - 19884375
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| |||||||||| || ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  19884454 catcgacaacaacttaaaactttgacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 19884375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 40811913 - 40811986
Alignment:
Q  25 caacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  40811913 caacatcttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatacaacttaat 40811986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 17519799 - 17519726
Alignment:
Q  25 caacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||| |||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||||    
T  17519799 caacatcttacaactttaacgacattgaaaacaacttacaactttaacaacttcaccaacatatgcaacttaat 17519726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 17534661 - 17534588
Alignment:
Q  25 caacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||| |||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||||    
T  17534661 caacatcttacaactttaacgacattgaaaacaacttacaactttaacaacttcaccaacatatgcaacttaat 17534588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 5215026 - 5215065
Alignment:
Q  59 cttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5215026 cttacaactttaacaacttgaccaacatatgcaacttaat 5215065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 14508012 - 14508051
Alignment:
Q  59 cttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14508012 cttacaactttaacaacttgaccaacatatgcaacttaat 14508051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 11258560 - 11258613
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaac 72  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||    
T  11258560 catcgtcaacaacttacaactttaacgacattgacaacaacttacaactttaac 11258613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 1208901 - 1208848
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaac 72  Q
    ||||| ||||||||||||| ||||||||||||||||   |||||||||||||||    
T  1208901 catcgacaacaacttacaactttaacgacattgacaccaacttacaactttaac 1208848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 6940630 - 6940587
Alignment:
Q  105 aaatatattttactttgaaaaatgcagttgaatggcataataat 148  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  6940630 aaatttattttactttgaaaaatgcagctggatggcataataat 6940587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 50756293 - 50756254
Alignment:
Q  14 gacatcatcggcaacaacttacaaatttaacgacattgac 53  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  50756293 gacaacatcgacaacaacttacaaatttaacgacattgac 50756254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 6774544 - 6774585
Alignment:
Q  107 atatattttactttgaaaaatgcagttgaatggcataataat 148  Q
    ||||||||||||||||||||||| | || |||||||||||||    
T  6774544 atatattttactttgaaaaatgccgctggatggcataataat 6774585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 41173263 - 41173223
Alignment:
Q  59 cttacaactttaacaactt-gaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  41173263 cttacaacttaaacaacttagaccaacatatgcaacttaat 41173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1662 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1662
Description:

Target: scaffold1662; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 352 - 273
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  352 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 20585477 - 20585556
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  20585477 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 20585556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 44374067 - 44374147
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaatt 99  Q
    ||||| ||||||||||||| |||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  44374067 catcgacaacaacttacaactttaacgacattgacaacaacctacaactttaacaacttgaccaacatatgcaacttaatt 44374147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 44382932 - 44383012
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaatt 99  Q
    ||||| ||||||||||||| |||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  44382932 catcgacaacaacttacaactttaacgacattgacaacaacctacaactttaacaacttgaccaacatatgcaacttaatt 44383012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 12466191 - 12466112
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12466191 catcgacaacaacttgcaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 12466112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 46387012 - 46386939
Alignment:
Q  25 caacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  46387012 caacatcttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 46386939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 19282213 - 19282292
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||| |||||||||||||| |||||||||||||||||    
T  19282213 catcgacaacaacttacaactttaacgacattgacaacaacttacaattttaacaacttgacaaacatatgcaacttaat 19282292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 11425075 - 11425154
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  11425075 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 11425154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 37018719 - 37018798
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  37018719 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaactggaccaacatatgcaacttaat 37018798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 42874929 - 42874999
Alignment:
Q  28 caacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  42874929 caacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 42874999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 25090774 - 25090853
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| ||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||    
T  25090774 catcgacaacaacttacaactttaatgacaatgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 25090853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 16997649 - 16997727
Alignment:
Q  20 atcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||| ||||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  16997649 atcgacaacaacttacaactttaatgacattgacaacaacttacaactttaacaacttgaccaacatgtgcaacttaat 16997727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 10357328 - 10357288
Alignment:
Q  59 cttacaactttaacaactt-gaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  10357328 cttacaacttaaacaacttagaccaacatatgcaacttaat 10357288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 23969554 - 23969475
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  23969554 catcgacaacaacttacaaatttaacgacattgacaacaacttacaactttaacaactttaccaacatatgcaacttaat 23969475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 28653433 - 28653354
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  28653433 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 28653354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 36839295 - 36839374
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  36839295 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 36839374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 17306608 - 17306687
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  17306608 catcgacaacaacttacaactttaacgacattgacaacaacatacaactttaacaacttgaccaacatatgcaacttaat 17306687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 24515308 - 24515386
Alignment:
Q  20 atcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||| ||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24515308 atcgacaacaacttgcaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 24515386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 9975089 - 9975128
Alignment:
Q  59 cttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  9975089 cttacaactttaacaatttgaccaacatatgtaacttaat 9975128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 19675872 - 19675951
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  19675872 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 19675951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 21046980 - 21046901
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  21046980 catcgacaacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 21046901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 42912171 - 42912250
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  42912171 catcgacaacaacttacaactttaatgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 42912250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 16059238 - 16059166
Alignment:
Q  26 aacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  16059238 aacaacttacaactttaactacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 16059166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 4596776 - 4596697
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||||| ||||||||  ||||||||||||||||||| || ||||||||||||||||||    
T  4596776 catcgacaacaacttacaactttaacgaaattgacaacaacttacaactttaacaactcgatcaacatatgcaacttaat 4596697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 20179452 - 20179372
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaatt 99  Q
    ||||| ||||||||||||| |||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  20179452 catcgacaacaacttacaactttaacgacattgacaacaacctacaactttaacaacttgaccaacatatgcaacttaatt 20179372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 24713329 - 24713368
Alignment:
Q  59 cttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  24713329 cttacaacttaaacaacttgaccaacatatgcaacttaat 24713368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 42818829 - 42818780
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactt 68  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||    
T  42818829 catcgacaacaacttacaactttaacgacattgacaacaacttacaactt 42818780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 15891627 - 15891555
Alignment:
Q  26 aacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  15891627 aacaacttacaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 15891555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 7825767 - 7825846
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  7825767 catcgacaacaacttacaactttaacaacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 7825846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 27126408 - 27126329
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||| ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27126408 catcgacaacaacttacaactttaaagacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 27126329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 31733869 - 31733908
Alignment:
Q  59 cttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31733869 cttacaactttaacaacttgaccaacatatgcaacttaat 31733908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 25920781 - 25920834
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaac 72  Q
    ||||| ||||||||||||| ||||||||||||||| |  ||||| |||||||||    
T  25920781 catcgacaacaacttacaactttaacgacattgaccacaacttataactttaac 25920834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 23517 - 23596
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| |||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23517 catcgacaacaacttaaaactttaacgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 23596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 13465 - 13386
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  13465 catcgacaacaacttacagctttaatgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 13386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 19732 - 19653
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| ||||||||||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  19732 catcgacaacaacttacagctttaatgacattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 19653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1817 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1817
Description:

Target: scaffold1817; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 327 - 249
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||| |||||||||| || |||||| ||||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  327 catcgacaacaacttaaaactttaactacattgacaacaacttacaactttaa-aacatgaccaacatatgcaacttaat 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 19920767 - 19920834
Alignment:
Q  31 cttacaaatttaacgacattgacaaacacttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    ||||||| || ||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  19920767 cttacaacttaaacaatattgacaacaacttacaactttaacaacttgaccaacatatgcaacttaat 19920834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 1970 - 2026
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaacaac 75  Q
    ||||| ||||||||||||| ||||||||||||||| |  ||||||||||||||||||    
T  1970 catcgacaacaacttacaactttaacgacattgacgacaacttacaactttaacaac 2026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 5604 - 5565
Alignment:
Q  59 cttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  5604 cttacaacttaaacaacttgaccaacatatgcaacttaat 5565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 327 - 365
Alignment:
Q  59 cttacaactttaacaacttgaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  327 cttacaactt-aacaacttgaccaacatatgcaacttaat 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 27442 - 27488
Alignment:
Q  26 aacaacttacaaatttaacgacattgacaaacacttacaactttaac 72  Q
    |||||||||||| |||||| ||||||||||  |||||||||||||||    
T  27442 aacaacttacaactttaactacattgacaacaacttacaactttaac 27488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 18843 - 18894
Alignment:
Q  19 catcggcaacaacttacaaatttaacgacattgacaaacacttacaactttaa 71  Q
    ||||| ||||||||||||| |||||||||||||| ||  ||||||||||||||    
T  18843 catcgacaacaacttacaa-tttaacgacattgataacaacttacaactttaa 18894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 57908 - 57948
Alignment:
Q  59 cttacaactttaacaactt-gaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  57908 cttacaacttaaacaacttagaccaacatatgcaacttaat 57948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 145895 - 145935
Alignment:
Q  59 cttacaactttaacaactt-gaccaacatatgcaacttaat 98  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  145895 cttacaacttaaacaacttagaccaacatatgcaacttaat 145935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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