View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_163 (Length: 296)
Name: NF11324A_low_163
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_163 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 11365141 - 11364875
Alignment:
| Q |
17 |
acatcactcaaccaatattaacctaaagttgcaaaggggaaatgcaatgacaatgctaagatgtaaaatatgtttatgtgatgcaaagatatttagcagt |
116 |
Q |
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| T |
11365141 |
acataactcaaccaatattaacctaaagttgcaaaggggaaatgaaatgacaatgctaagatgtaaaatatgtttatgtgatgcaaagatatgcagcagt |
11365042 |
T |
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| Q |
117 |
ttaaaaagaatgaccaatgtactgttgtttcaggtaacaaaaactcaccaaaattaaacgttaatagagtacaagatataccttgtcaagcaaatcactt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
11365041 |
ttaaaaagaatgaccaatctactgttgtttcaggtaacaaaaactcaccaaaattaaatgttaatagagtacaagatataccttgtcaagcaaatcattt |
11364942 |
T |
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| Q |
217 |
tctacatcattcttaacaagacgtgacaagcatctgattaatccaggcagagaaacctttagattcg |
283 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11364941 |
tctacatcattcttaacaagatgtgacaagcatctgattaatccaggcagagaaacctttagattcg |
11364875 |
T |
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