View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_164 (Length: 296)
Name: NF11324A_low_164
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_164 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 33495833 - 33496100
Alignment:
| Q |
7 |
ttttgcacaaacaaagaagagatgaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttgcattaagattgaca |
106 |
Q |
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| T |
33495833 |
ttttgcacaaacaaagaagagattaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttacattaagattgaca |
33495932 |
T |
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| Q |
107 |
tgggcgggcaagcaatgatgagctaaatgccatataaaggctcgaacacggtgaggaatatcaagattctagatattcatccaaagagaattatcgtggg |
206 |
Q |
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| T |
33495933 |
cgggtgggcaagaaatgatgagctaaatgccacataaaggctcgaacacggtgaggaatatcgagagtccagatattcatccaaagagaattattgtggg |
33496032 |
T |
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| Q |
207 |
cagaatcatgagggtggagtagatcaatacaaataagggtgttgctatttccatattctggtgtcaaa |
274 |
Q |
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| T |
33496033 |
cagaatcatgagggtggagtagatcaatacaaataagggtgttgttatttccatattctggtgtcaaa |
33496100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 4243743 - 4243510
Alignment:
| Q |
7 |
ttttgcacaaacaaagaagagatgaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttgcattaagattgaca |
106 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4243743 |
ttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcaaacataacacatgattcctcgcactggattcctcttgcattaagattgaca |
4243644 |
T |
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| Q |
107 |
tgggcgggcaagcaatgatgagctaaatgccatataaaggctcgaacacggtgaggaatatcaagattctagatattcatccaaagagaattatcgtggg |
206 |
Q |
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| T |
4243643 |
cgagtgggcaagcaattatgagctaaacgccatagaaaggctcggacacggtgaggaatattgagattccagatattcatccatgaagaattattgtggg |
4243544 |
T |
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| Q |
207 |
cagaatcatgagggtggagtagatcaatacaaat |
240 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
4243543 |
cagaatcatgagggtggagtagatcactacaaat |
4243510 |
T |
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