View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_17 (Length: 452)
Name: NF11324A_low_17
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 37321417 - 37321847
Alignment:
| Q |
1 |
gaactttcttatggaacctcggtacaaatttaattttcaactcttcccaaatnnnnnnn-ggattatgctcaactattaattcttccattaatctatgta |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37321417 |
gaactttcttatggaacctcggtacaaatttaatttg-aactcttcccaaaaaaaaaaaaggattatgctcaactattaattcttccattaatctatgta |
37321515 |
T |
|
| Q |
100 |
ggcttatgtgacacaagatgataccttattgccaaccttaactgttagagaagcagtgttctattcagctcaacttcaattacctaacacaatgtccaag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37321516 |
ggcttatgtgacacaagatgataccttattgacaaccttaactgttagagaagcagtgttctattcagctcaacttcagttacctaacacaatgtccaag |
37321615 |
T |
|
| Q |
200 |
gaagagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtg |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37321616 |
gaagagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatgaacacaagaattggagggtggggtgtgaaaggcataagtg |
37321715 |
T |
|
| Q |
300 |
ggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgatagtgctgcttc |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37321716 |
ggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctatttcttgatgagccaactagtggacttgatagtgctgcttc |
37321815 |
T |
|
| Q |
400 |
ttactatgttatgaaaagaattgctactttgg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
37321816 |
ttactatgttatgaaaagaattgctactttgg |
37321847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 62 - 424
Target Start/End: Original strand, 37330400 - 37330762
Alignment:
| Q |
62 |
attatgctcaactattaattcttccattaatctatgtaggcttatgtgacacaagatgataccttattgccaaccttaactgttagagaagcagtgttct |
161 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||| || |||||||||| |||||||||||||||| || |
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| T |
37330400 |
attatgttcaactattaattctttcattaacctatgtaggcttatgtcacacaagatgatatcttactgacaaccttaaccgttagagaagcagtgtact |
37330499 |
T |
|
| Q |
162 |
attcagctcaacttcaattacctaacacaatgtccaaggaagagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37330500 |
attcagctcaacttcaattacctaacacaatgtctaaagaagagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatgaa |
37330599 |
T |
|
| Q |
262 |
cacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttcttttt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37330600 |
cacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttcttttt |
37330699 |
T |
|
| Q |
362 |
cttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaattgct |
424 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37330700 |
cttgatgagccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaattgct |
37330762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 19545098 - 19544671
Alignment:
| Q |
1 |
gaactttcttatggaacctcggtacaaatttaattttcaactctt-cccaaatnnnnnnnggattatgctcaactattaattcttccattaatctatgta |
99 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |||| || |||||| |||||||| |||||||||||||||| |||||||||||||| |
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| T |
19545098 |
gaactatcttatggaacctcggtacaaagttaattttgaactttttcccaaa----aaaaggattatgttcaactattaattctttcattaatctatgta |
19545003 |
T |
|
| Q |
100 |
ggcttatgtgacacaagatgataccttattgccaaccttaactgttagagaagcagtgttctattcagctcaacttcaattacctaacacaatgtccaag |
199 |
Q |
| |
|
||||||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||| |
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|
| T |
19545002 |
ggcttatgtaactcaagatgatacgttattgacaaccttgactgttagagaagcagtgtactattcagctcaacttcaattacctgactcaatgtctaag |
19544903 |
T |
|
| Q |
200 |
gaagagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtg |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||| ||||||||| |||||||| ||||||||||||| |
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|
| T |
19544902 |
gaagagaagaaagagagagctgattttacaatcagagaaatgggtctgcaagatgctactaacacaataattggaggatggggtgttaaaggcataagtg |
19544803 |
T |
|
| Q |
300 |
ggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgatagtgctgcttc |
399 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
19544802 |
gaggtcagaaaaggagagttagcatttgcattgagatccttacacgtccaaaacttctttttcttgatgaaccaacaagtggacttgatagtgctgcttc |
19544703 |
T |
|
| Q |
400 |
ttactatgttatgaaaagaattgctactttgg |
431 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |
|
|
| T |
19544702 |
ttactatgttatgacaagaattgctaccttgg |
19544671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 99 - 420
Target Start/End: Complemental strand, 37347168 - 37346847
Alignment:
| Q |
99 |
aggcttatgtgacacaagatgataccttattgccaaccttaactgttagagaagcagtgttctattcagctcaacttcaattacctaacacaatgtccaa |
198 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||||||| || |
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|
| T |
37347168 |
aggcatatgtgacacaagatgatactctattaacaaccttaaccgttaaagaagcagtgtactattcagctcaacttcaattacctgacacaatgtctaa |
37347069 |
T |
|
| Q |
199 |
ggaagagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagt |
298 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
37347068 |
tgaagagaaaaaagaaagagctgattttacaataagagaaatgggtctgcaagatgcaatcaacacaagaataggagggtggggtgttaaaggaataagt |
37346969 |
T |
|
| Q |
299 |
gggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgatagtgctgctt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37346968 |
gggggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgctt |
37346869 |
T |
|
| Q |
399 |
cttactatgttatgaaaagaat |
420 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37346868 |
cttactatgttatgaaaagaat |
37346847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 235 - 413
Target Start/End: Original strand, 37298256 - 37298434
Alignment:
| Q |
235 |
agaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgag |
334 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||| ||||||||| ||| |||||| |||| ||||| |||| ||||||| | ||||||||||||||| |
|
|
| T |
37298256 |
agaaatgggcctgcaggatgctattaacacaagggttggagggtatggttccaaaggcctaagcggggggcaaagaaggagactaagcatttgcattgag |
37298355 |
T |
|
| Q |
335 |
atcctaacacgtccaagacttctttttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatga |
413 |
Q |
| |
|
|| ||||| | || ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
37298356 |
attctaactcaccctagacttcttttccttgatgaaccaactagtggacttgatagtgcagcttcctactatgttatga |
37298434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 260 - 413
Target Start/End: Original strand, 37291163 - 37291316
Alignment:
| Q |
260 |
aacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtccaagacttcttt |
359 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| ||||||| || |||| || ||| ||||||||||||| ||||| ||||| || || |||||||| | |
|
|
| T |
37291163 |
aacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctct |
37291262 |
T |
|
| Q |
360 |
ttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatga |
413 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
37291263 |
tccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatga |
37291316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37330338 - 37330383
Alignment:
| Q |
1 |
gaactttcttatggaacctcggtacaaatttaattttcaactcttc |
46 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
37330338 |
gaactgtcttatgggacctcggtacaaatttaattttgaacacttc |
37330383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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