View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_172 (Length: 293)
Name: NF11324A_low_172
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_172 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 3701422 - 3701123
Alignment:
| Q |
6 |
tttggtgttccggatagagtgcattggaaatttggaaaaatatccgagaagacatgtcatttttcaatacaaagtttttgttatgacatagctctcagag |
105 |
Q |
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| T |
3701422 |
tttggtgttccggatagagtgcattggaaatttggaagactctccgagaagacatgtcattttccaaaagaaggtttttgttatgacatagctgtcagag |
3701323 |
T |
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| Q |
106 |
atttaacaatattgcatttttgagttggattcgaggacataccttgattaagttgaaagatatcttttaacatctcattgaagtgctcgagtttatgtca |
205 |
Q |
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| T |
3701322 |
atttaacaatgttgcattttagagttggattcgaggacatactttgattaagttgaaagatatcttttaacatctcattgtagtgcccgagtttatgtca |
3701223 |
T |
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| Q |
206 |
aagagttaagttagaatattttaggtgaagaatttacggac-----------------tctttagagcaactacaatggtgatcttctttaaagattatt |
288 |
Q |
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| T |
3701222 |
aagagttaagttagaatattttaggtgaagaatttacggacaatagattctattttagtctttagagcaactacaatggtgatcttctttaaagattatt |
3701123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 3715125 - 3715084
Alignment:
| Q |
247 |
tctttagagcaactacaatggtgatcttctttaaagattatt |
288 |
Q |
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| T |
3715125 |
tctttagagcaacttcaatggtgatcttctttaaagattatt |
3715084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 3715184 - 3715143
Alignment:
| Q |
205 |
aaagagttaagttagaatattttaggtgaagaatttacggac |
246 |
Q |
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| T |
3715184 |
aaagagttaacttagaatattttaggttaagaatttacggac |
3715143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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