View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_176 (Length: 289)
Name: NF11324A_low_176
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_176 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 5337694 - 5337415
Alignment:
| Q |
11 |
cacagaagcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagnnnnnnn-gt |
109 |
Q |
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| T |
5337694 |
cacagaagcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagaaaaaaaagt |
5337595 |
T |
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| Q |
110 |
tacagtaaataagctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5337594 |
tacagtaaataagctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattg |
5337495 |
T |
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| Q |
210 |
gaatctgattttgaacctgaattcgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgacacctacata |
289 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5337494 |
gaatctgattttgaacctgaatttgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgtcacctacata |
5337415 |
T |
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