View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_177 (Length: 289)
Name: NF11324A_low_177
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_177 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 862834 - 862567
Alignment:
| Q |
15 |
aagagaaatgatgttgagaacatataaaagagtttcttcnnnnnnnnnngaacatataaaagagaatgacacatgtatagtatagataagttaannnnnn |
114 |
Q |
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| T |
862834 |
aagagaaatgatgttgagaacatataaaagagttgctt-aaaaaaaaaagaacatataaaagagaatgacacatgtatagtatagataagttaatttttt |
862736 |
T |
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| Q |
115 |
nattaaatcttgtcccaaacatatacttagggagataaaactaacctttatattggaattttgctctttaagatatttcccagcaccggttatggtacca |
214 |
Q |
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| T |
862735 |
tattaaatcttgtcccaaacatatacttagggagataaaactaacctttatattggaattttgctctttaagatatttcccagcaccggttatggtacca |
862636 |
T |
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| Q |
215 |
ccagtacctatcccagaaacaaatgcgtcaattttcccatccgtgcctttccatatctctggaccggtg |
283 |
Q |
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| T |
862635 |
ccagtacctatcccagaaacaaatgcgtcaattttcccatccgtgcctttccatatctctggaccggtg |
862567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 46937003 - 46937126
Alignment:
| Q |
156 |
taacctttatattggaattttgctctttaagatatttcccagcaccggttatggtaccaccagtacctatcccagaaacaaatgcgtcaattttcccatc |
255 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||| |||| |||||| | |
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| T |
46937003 |
taaccttgatattggaattctgctctttaagatatttcccaacacctgttatggtaccaccagtacctataccactgacaaatgcatcaactttccctcc |
46937102 |
T |
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| Q |
256 |
cgtgcctttccatatctctggacc |
279 |
Q |
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| T |
46937103 |
tgtgcctttccatatctctggacc |
46937126 |
T |
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