View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_179 (Length: 288)
Name: NF11324A_low_179
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_179 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 22292126 - 22291917
Alignment:
| Q |
19 |
gtttcttcaattccattcattaattatgtaaatttgcaattagattcacaacacaatcacatttgggtctctgatgagaacagggtaatagttgattgaa |
118 |
Q |
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| T |
22292126 |
gtttcttcaattgcattcattaattttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttgattgaa |
22292027 |
T |
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| Q |
119 |
tcggatccactaattttgttgttgtatttgacctcaagaattcaccagaagcctcacccttcacatcaaagccaaatgaatgaaaaccattcggtttcat |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22292026 |
tcggatccactaattttgttgttgtatttgacttcaagaattcaccagaagcctcacccttcacatcaaagccaaatgaatgaaaaccattcggtttcat |
22291927 |
T |
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| Q |
219 |
tctcagtttc |
228 |
Q |
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|||||||||| |
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| T |
22291926 |
tctcagtttc |
22291917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 22291918 - 22291877
Alignment:
| Q |
243 |
tcttctcttatttctcaactttcattatttccaagtttatat |
284 |
Q |
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| T |
22291918 |
tcttctcttatttctcacctttcattatttccaagtttatat |
22291877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 15434152 - 15434052
Alignment:
| Q |
19 |
gtttcttcaattccattcattaattatgtaaatttgcaattagattcacaacacaatcacatttgggtctctgatgagaacagggtaatagttgattgaa |
118 |
Q |
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| T |
15434152 |
gtttcttcaattccattcattaattttgtaaatttgcaattagattcacaacagaatcagatttgggtctctgatgagaacaggctaatagttgattgaa |
15434053 |
T |
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| Q |
119 |
t |
119 |
Q |
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| T |
15434052 |
t |
15434052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 53559393 - 53559297
Alignment:
| Q |
153 |
caagaattcaccagaagcctcacccttcacatcaaagccaaatgaatgaaaaccattcggtttcattctcagtttcacccctcactttcatcttctc |
249 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53559393 |
caagaattcaccagaagcctgacccctcacatcaaagccaaatgaatgaaaaccattcggtttcaatctcagtttcacccctcactttcatcttctc |
53559297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 17682459 - 17682554
Alignment:
| Q |
19 |
gtttcttcaattccattcattaattatg-taaatttgcaattagattcacaacacaatcacatttgggtctctgatgagaacagggtaatagttga |
113 |
Q |
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|||||||||||||||||||||| | | ||||||||||||||| ||||||||||| ||| |||||||||||||| ||||| ||||| |||||||| |
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| T |
17682459 |
gtttcttcaattccattcattattggtaataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttga |
17682554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 17682568 - 17682599
Alignment:
| Q |
219 |
tctcagtttcacccctcactttcatcttctct |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17682568 |
tctcagtttcacccctcactttcatcttctct |
17682599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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