View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_18 (Length: 451)
Name: NF11324A_low_18
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 24706792 - 24707261
Alignment:
| Q |
1 |
gaacatttggaaattttcaaccaattttattaactgatgtcaaatcactgtcttttatgtggttgcattgtgatttgtttcctgcaga------------ |
88 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
24706792 |
gaacatttggaaattttcaaccaagtttattaactgctgtcaaatcactgtcttttgtgtggttgcattgtgatttttttcctgcagaaaatcacccaga |
24706891 |
T |
|
| Q |
89 |
aactcagcatcatctccagatcacaaacacattataatatagttagtttagttagttacaaccggtaacttgatgtacaagttagccaattatcttttca |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24706892 |
aactcagcatcatctccagatcacaaacacattataatatagttagtttagttagttacaaccggtaacttgatgtacaagttagccaattatcttttca |
24706991 |
T |
|
| Q |
189 |
ttcctatataaaggattcatgttattaacttgatgttaaatcaattcattcaatagattcagttacattggttcttctctaacctctgagtcctaagact |
288 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24706992 |
ttcctatataaaggattaatgttattaacttgatgttaaatcaattcattcaatagattcagttacattgattcttctctaacctctgagtcctaagact |
24707091 |
T |
|
| Q |
289 |
aaacctatttacaagaggattacattcctcaaacttaaatttatgaccagataatgaataactatcttttga------------ttgtttttactcaaat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
24707092 |
aaacctatttacaagaggattacattcctcaaacttaaatttatgaccagataatgaataactatcttttgattgttagctaatttgtttttacttaaat |
24707191 |
T |
|
| Q |
377 |
taatagtcaagtttaagtaggatactgtgttgtaggtctttctgccacgattcactgaaattcatctcag |
446 |
Q |
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| T |
24707192 |
taatagtcaagtttaaataggatactatgttgtaggtctttctgccacgattcactgagattcagctcag |
24707261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 30512785 - 30512691
Alignment:
| Q |
270 |
acctctgagtcctaagactaaacctatttacaagaggattacattcctcaaacttaaatttatgaccagataatgaataactatcttttgattgt |
364 |
Q |
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|||||||| |||||| |||| ||||||| | || |||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
30512785 |
acctctgattcctaacactatacctattcataataggatttcattactcaaacttaaatttatgaacagataatgaacgactatcttttgtttgt |
30512691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 3030079 - 3030146
Alignment:
| Q |
201 |
ggattcatgttattaacttgatgttaaatcaattcattcaatagattcagttacattggttcttctct |
268 |
Q |
| |
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|||||||||| | |||||||| |||| |||| || |||||||||||||||||| |||| ||||||||| |
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| T |
3030079 |
ggattcatgtaactaacttgaagttagatcattttattcaatagattcagttaaattgattcttctct |
3030146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 25127113 - 25127046
Alignment:
| Q |
201 |
ggattcatgttattaacttgatgttaaatcaattcattcaatagattcagttacattggttcttctct |
268 |
Q |
| |
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|||||||||| | |||||||| |||| |||| || |||||||||||||||||| |||| ||||||||| |
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| T |
25127113 |
ggattcatgtaactaacttgaagttagatcattttattcaatagattcagttaaattgattcttctct |
25127046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 27659684 - 27659549
Alignment:
| Q |
123 |
taatatagttagttt-agttagttacaaccggtaacttgatgtacaagttagccaattatcttttcattcctatataaaggattcatgttattaacttga |
221 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||| | ||||||| ||| ||| |||| ||| ||||||| | ||||| ||| | |||||||| |
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| T |
27659684 |
taatatagttagttttagttagttacaacaagtaacttgctagacaagtttaccagttagctttccatctctatatatatgattcttgtaagtaacttga |
27659585 |
T |
|
| Q |
222 |
tgttaaatcaattcattcaatagattcagttacatt |
257 |
Q |
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| | ||||||||||| ||||||||| |||||||| |
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| T |
27659584 |
actcatatcaattcatttaatagattcggttacatt |
27659549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 27118752 - 27118814
Alignment:
| Q |
99 |
catctccagatcacaaacacattataatatagttag-tttagttagttacaaccggtaacttg |
160 |
Q |
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|||||| |||||||||| ||| || ||||||||||| |||||||| ||||||| ||||||||| |
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| T |
27118752 |
catctcaagatcacaaatacactaaaatatagttagttttagttacttacaactggtaacttg |
27118814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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