View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_187 (Length: 284)
Name: NF11324A_low_187
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_187 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 21831747 - 21832011
Alignment:
| Q |
20 |
cttggtatccaagtgccctcctcgaaagcgatcgtggtatttgatcactccattaataccatgtttgagatctaatgtcctcattgatgtttttatcggt |
119 |
Q |
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| T |
21831747 |
cttggtatccaagtgccctcctcgaaagccatcgtggtatttgatcactccattaataccatgtttgagatctaatgtcctcattgatgtttttatcggt |
21831846 |
T |
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| Q |
120 |
ctacaaagnnnnnnnnnnnnngcttattttaaatgtattttcaggttatttcaagttcgaactccatgtggttgatgagatctctataagatgaacttgt |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21831847 |
ctacaaagtttttttttttttgcttattttaaatgtattttcaggttatttcaagttcgaactccatgtggttgatgagatctctataagatgaacttgt |
21831946 |
T |
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| Q |
220 |
tttgttgataccatatttgatgtaagagacgagtgctgattatcatgaaattatgcatcctatta |
284 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21831947 |
tttgttgataccatatttggtgtaagagacgaatgctgattatcatgaaattatgcatcctatta |
21832011 |
T |
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