View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_192 (Length: 280)

Name: NF11324A_low_192
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_192
NF11324A_low_192
[»] chr5 (21 HSPs)
chr5 (12-274)||(41583433-41583695)
chr5 (90-260)||(16667259-16667430)
chr5 (91-204)||(30501164-30501277)
chr5 (91-204)||(30541507-30541620)
chr5 (122-218)||(12198196-12198291)
chr5 (88-209)||(30104770-30104891)
chr5 (117-201)||(7210924-7211008)
chr5 (89-209)||(7719171-7719291)
chr5 (89-209)||(18229621-18229740)
chr5 (90-260)||(31672379-31672550)
chr5 (134-232)||(7581174-7581272)
chr5 (88-266)||(2918557-2918737)
chr5 (117-218)||(24173176-24173277)
chr5 (155-215)||(31889649-31889709)
chr5 (179-254)||(231350-231425)
chr5 (155-218)||(15547130-15547193)
chr5 (103-209)||(2827583-2827689)
chr5 (155-201)||(7606943-7606989)
chr5 (155-260)||(8221155-8221261)
chr5 (134-238)||(20721245-20721349)
chr5 (117-213)||(30370872-30370967)
[»] chr8 (31 HSPs)
chr8 (90-208)||(27734360-27734478)
chr8 (90-260)||(24733140-24733310)
chr8 (93-233)||(35209927-35210067)
chr8 (90-260)||(39691083-39691252)
chr8 (88-209)||(28207590-28207711)
chr8 (161-242)||(44960502-44960583)
chr8 (88-186)||(3146003-3146100)
chr8 (90-239)||(9200006-9200154)
chr8 (118-182)||(8674455-8674519)
chr8 (134-218)||(29217560-29217644)
chr8 (112-207)||(37813423-37813519)
chr8 (89-209)||(42636385-42636505)
chr8 (131-209)||(10893450-10893528)
chr8 (88-181)||(7574226-7574319)
chr8 (89-218)||(44042504-44042633)
chr8 (116-260)||(25162988-25163134)
chr8 (89-260)||(31264964-31265135)
chr8 (117-186)||(167886-167955)
chr8 (155-260)||(25279961-25280065)
chr8 (156-213)||(27633644-27633701)
chr8 (92-260)||(12002237-12002405)
chr8 (92-260)||(37564300-37564468)
chr8 (117-204)||(2258115-2258202)
chr8 (88-214)||(1876496-1876622)
chr8 (88-194)||(20279589-20279695)
chr8 (88-194)||(21066216-21066322)
chr8 (134-239)||(16459255-16459360)
chr8 (90-139)||(37426387-37426436)
chr8 (102-259)||(41105967-41106124)
chr8 (117-214)||(42907537-42907633)
chr8 (178-218)||(40852101-40852141)
[»] chr7 (29 HSPs)
chr7 (94-260)||(46726109-46726273)
chr7 (90-259)||(27123242-27123412)
chr7 (118-233)||(2347413-2347528)
chr7 (90-218)||(28770445-28770574)
chr7 (120-195)||(22618730-22618805)
chr7 (117-209)||(36939466-36939558)
chr7 (122-218)||(47639184-47639280)
chr7 (124-260)||(7723312-7723444)
chr7 (117-218)||(2959584-2959685)
chr7 (155-260)||(36061470-36061575)
chr7 (117-260)||(35731282-35731425)
chr7 (92-207)||(10031942-10032057)
chr7 (123-214)||(35833761-35833852)
chr7 (134-241)||(39156032-39156139)
chr7 (117-218)||(36189474-36189576)
chr7 (117-209)||(39321001-39321093)
chr7 (155-218)||(20397479-20397542)
chr7 (90-260)||(43234758-43234928)
chr7 (128-231)||(44543728-44543831)
chr7 (116-186)||(6506366-6506436)
chr7 (156-214)||(24450518-24450576)
chr7 (146-260)||(31902718-31902831)
chr7 (175-260)||(47754475-47754560)
chr7 (132-265)||(3692887-3693022)
chr7 (179-235)||(22688944-22689000)
chr7 (91-203)||(37352436-37352548)
chr7 (179-239)||(40998371-40998431)
chr7 (117-260)||(44537336-44537480)
chr7 (197-233)||(47371929-47371965)
[»] chr2 (33 HSPs)
chr2 (88-216)||(24762726-24762854)
chr2 (117-216)||(24765330-24765429)
chr2 (92-218)||(20128300-20128426)
chr2 (127-260)||(24791994-24792128)
chr2 (134-260)||(35022619-35022744)
chr2 (90-233)||(13538363-13538507)
chr2 (120-239)||(22440132-22440251)
chr2 (129-233)||(34233917-34234021)
chr2 (122-260)||(814996-815133)
chr2 (88-209)||(1334903-1335024)
chr2 (117-218)||(2713437-2713538)
chr2 (120-209)||(14295626-14295715)
chr2 (124-209)||(34895973-34896057)
chr2 (117-240)||(44002356-44002480)
chr2 (121-260)||(9153444-9153581)
chr2 (89-208)||(20064878-20064997)
chr2 (117-218)||(34898932-34899027)
chr2 (117-235)||(39445424-39445542)
chr2 (146-207)||(8964416-8964477)
chr2 (112-201)||(13081929-13082018)
chr2 (122-187)||(37978494-37978559)
chr2 (91-218)||(4762318-4762446)
chr2 (117-209)||(15690190-15690282)
chr2 (134-218)||(41073124-41073208)
chr2 (122-209)||(19890208-19890295)
chr2 (155-200)||(4616871-4616916)
chr2 (91-136)||(20683089-20683134)
chr2 (118-199)||(36866410-36866491)
chr2 (175-260)||(41544031-41544116)
chr2 (155-260)||(43745667-43745772)
chr2 (117-209)||(11944892-11944984)
chr2 (146-218)||(18734376-18734448)
chr2 (134-237)||(37993090-37993194)
[»] chr4 (40 HSPs)
chr4 (90-260)||(31072437-31072608)
chr4 (117-233)||(13800691-13800807)
chr4 (88-239)||(8297837-8297989)
chr4 (89-218)||(51834881-51835011)
chr4 (120-260)||(32692920-32693061)
chr4 (118-201)||(40667318-40667401)
chr4 (117-236)||(47461034-47461153)
chr4 (117-218)||(25115273-25115374)
chr4 (134-218)||(11260569-11260653)
chr4 (108-184)||(47040789-47040865)
chr4 (123-219)||(48315925-48316021)
chr4 (118-233)||(5798981-5799096)
chr4 (155-218)||(41370178-41370241)
chr4 (90-205)||(45900172-45900287)
chr4 (117-176)||(47741008-47741067)
chr4 (117-254)||(7852517-7852655)
chr4 (122-216)||(29256793-29256887)
chr4 (117-239)||(53391223-53391345)
chr4 (95-209)||(54552765-54552879)
chr4 (144-209)||(14949006-14949071)
chr4 (88-209)||(35777718-35777839)
chr4 (93-218)||(41956440-41956565)
chr4 (117-209)||(12618713-12618805)
chr4 (92-218)||(31690353-31690479)
chr4 (122-233)||(41415746-41415857)
chr4 (132-218)||(8558404-8558490)
chr4 (90-195)||(24981760-24981865)
chr4 (117-182)||(36112530-36112594)
chr4 (89-218)||(49532261-49532389)
chr4 (117-193)||(20394633-20394709)
chr4 (89-209)||(23016241-23016361)
chr4 (83-195)||(53737827-53737939)
chr4 (163-218)||(16556008-16556063)
chr4 (117-236)||(30624691-30624810)
chr4 (146-260)||(2063499-2063612)
chr4 (175-217)||(19652686-19652728)
chr4 (117-223)||(48097947-48098053)
chr4 (134-210)||(12658257-12658333)
chr4 (136-204)||(31429291-31429359)
chr4 (91-207)||(50086429-50086544)
[»] chr6 (10 HSPs)
chr6 (88-208)||(35229258-35229378)
chr6 (88-233)||(4806498-4806644)
chr6 (120-254)||(15588653-15588786)
chr6 (117-216)||(6555050-6555149)
chr6 (88-218)||(2692440-2692569)
chr6 (117-239)||(1479081-1479203)
chr6 (89-209)||(19293472-19293592)
chr6 (161-260)||(2963253-2963352)
chr6 (155-260)||(10345962-10346067)
chr6 (87-223)||(6586422-6586557)
[»] chr1 (35 HSPs)
chr1 (88-233)||(45775823-45775965)
chr1 (117-214)||(43024927-43025024)
chr1 (146-220)||(9964347-9964421)
chr1 (88-260)||(2864109-2864280)
chr1 (88-209)||(46087064-46087183)
chr1 (118-209)||(27542856-27542948)
chr1 (90-210)||(39150550-39150670)
chr1 (122-233)||(27004018-27004129)
chr1 (112-260)||(45640537-45640685)
chr1 (117-233)||(46803510-46803626)
chr1 (118-233)||(9534368-9534483)
chr1 (118-213)||(15458417-15458512)
chr1 (133-209)||(26604951-26605027)
chr1 (120-224)||(26756190-26756294)
chr1 (88-195)||(39156227-39156334)
chr1 (88-218)||(14758525-14758655)
chr1 (90-195)||(34232740-34232845)
chr1 (117-218)||(41649881-41649982)
chr1 (90-194)||(39914639-39914743)
chr1 (155-214)||(5115620-5115679)
chr1 (117-260)||(6982959-6983101)
chr1 (155-209)||(35438048-35438102)
chr1 (198-264)||(46592433-46592499)
chr1 (155-233)||(47364038-47364116)
chr1 (202-235)||(705925-705958)
chr1 (141-218)||(30803333-30803409)
chr1 (117-190)||(47308512-47308584)
chr1 (117-209)||(1048689-1048780)
chr1 (92-184)||(4851289-4851380)
chr1 (91-127)||(18114535-18114571)
chr1 (178-218)||(18945136-18945176)
chr1 (155-203)||(40203103-40203151)
chr1 (88-136)||(45584505-45584553)
chr1 (117-193)||(47187856-47187932)
chr1 (89-193)||(48022388-48022492)
[»] chr3 (26 HSPs)
chr3 (117-218)||(38723235-38723336)
chr3 (117-218)||(28874487-28874588)
chr3 (88-218)||(40425081-40425211)
chr3 (88-260)||(45529087-45529259)
chr3 (120-260)||(48811336-48811476)
chr3 (122-239)||(48602243-48602361)
chr3 (92-265)||(4305109-4305278)
chr3 (120-218)||(34591099-34591197)
chr3 (122-218)||(38156514-38156609)
chr3 (87-186)||(46110895-46110994)
chr3 (92-187)||(48180212-48180307)
chr3 (137-208)||(53038294-53038365)
chr3 (155-213)||(25548213-25548271)
chr3 (119-260)||(32071111-32071252)
chr3 (91-260)||(43803939-43804107)
chr3 (155-260)||(46547749-46547853)
chr3 (88-209)||(52638177-52638297)
chr3 (172-260)||(21813124-21813212)
chr3 (163-214)||(19898116-19898167)
chr3 (155-214)||(47930114-47930173)
chr3 (129-191)||(49362391-49362453)
chr3 (120-193)||(13804883-13804956)
chr3 (88-209)||(53040435-53040556)
chr3 (118-233)||(25753481-25753596)
chr3 (135-218)||(49682180-49682263)
chr3 (134-214)||(51039767-51039847)
[»] scaffold0633 (1 HSPs)
scaffold0633 (117-218)||(5014-5115)
[»] scaffold0268 (1 HSPs)
scaffold0268 (144-209)||(20267-20332)
[»] scaffold0182 (1 HSPs)
scaffold0182 (155-218)||(20184-20247)
[»] scaffold1444 (2 HSPs)
scaffold1444 (88-209)||(951-1072)
scaffold1444 (144-209)||(1723-1788)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 41583433 - 41583695
Alignment:
Q  12 tgttatttcagtttttacttatgagagtaggcacgactttctcgtttgagtccttaaatgttaatagtatcatatgaagggtcttgttaatgagtgcccg 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  41583433 tgttatttcagttttgacttatgagagtaggcacgactttctcgtttgagtccttaactgttaatagtatcatatgaagggtcttgttaacgagtgcccc 41583532  T
Q  112 cgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatt 211  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41583533 cgggtcactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatt 41583632  T
Q  212 tactattgaagattcttaaagaatgccctggggacactcgttagcatttatcattcatgaagg 274  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  41583633 tactattgaagattcttaaagaatgccccgcggatactcgttagcatttatcattcatgaagg 41583695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 16667430 - 16667259
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    ||||||| |||| |||||||  |||| ||||||||||| ||| ||||||||| || ||||| || ||||||| || |||||||| ||||||| |||| ||    
T  16667430 gggtctttttaaagagtgcctccggggcactctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaa 16667331  T
Q  190 tacacagattttca-taaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||||||  |||||| |||||| |||||||| ||  | |||||| | ||  |||| ||||||||||| |||||    
T  16667330 tacacaatttttcattaaaaacttactatttaaagtgcttaaaaagtgttctggagacactcgttaacattt 16667259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 30501277 - 30501164
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaat 190  Q
    ||||||||||| |||||||| | || ||||||||||| ||||||||||||  || ||||| || ||||||| || |||||||| ||||||| |||| |||    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30501178  T
Q  191 acacagattttcat 204  Q
    |||||  |||||||    
T  30501177 acacaacttttcat 30501164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 30541620 - 30541507
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaat 190  Q
    ||||||||||| |||||||| | || ||||||||||| ||||||||||||  || ||||| || ||||||| || |||||||| ||||||| |||| |||    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30541521  T
Q  191 acacagattttcat 204  Q
    |||||  |||||||    
T  30541520 acacaacttttcat 30541507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 12198196 - 12198291
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||| ||||||||||||| ||||  || ||||||| |||||||||||||| |||||| || | | |||| ||||||||||||||||||||||    
T  12198196 tttaaggattccaaatttaaaaaatattgttt-aaaaagtcaaatattacaaatttcaatgctttaattgcacatattttcataaaaatttactatt 12198291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 30104770 - 30104891
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||| |||||||  ||||||| |||| ||||||||||| ||||||||||||  || ||||  || ||||||| ||  ||||||| ||||||||||||     
T  30104770 aagggtattgttaacaagtgccctcggggcactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattc 30104869  T
Q  188 aatacacagattttcataaaaa 209  Q
    ||||||||  ||||||| ||||    
T  30104870 aatacacaacttttcattaaaa 30104891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 7210924 - 7211008
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagatttt 201  Q
    |||| |||||| |||| ||||||||||| ||||| || ||||||||||| | | |||||||||||| |||||||||||| |||||    
T  7210924 cactttttaagtatcctaaatttaaaaattattcgttaaaaaagttaaacacttcaaattccaatgtattgaatacacatatttt 7211008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 7719171 - 7719291
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    |||||||| |||| |||||||| |||| ||||||||||| || ||| ||||||||| ||||| || ||||| | || |||||||| |||||||  ||| |    
T  7719171 agggtctttttaacgagtgcccccgggacactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatattca 7719270  T
Q  189 atacacagattttcataaaaa 209  Q
    |||||||  ||||||| ||||    
T  7719271 atacacaacttttcattaaaa 7719291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 18229740 - 18229621
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||||||| |||||||| |  || |||||||||| ||||||||||||  || ||||| || |||||||||| |||||||| ||||||| |||| |    
T  18229740 agggtcttgttaacgagtgcccccaagt-actctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacattca 18229642  T
Q  189 atacacagattttcataaaaa 209  Q
    ||| |||  ||||||| ||||    
T  18229641 ataaacaatttttcattaaaa 18229621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 260
Target Start/End: Original strand, 31672379 - 31672550
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattcc-ttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    |||||||||||| |||||||| |||| ||||||||||| || |||||   | ||| |||||| |  ||||||| |||| || ||| ||||||||||||||    
T  31672379 gggtcttgttaacgagtgcccccggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattga 31672478  T
Q  189 atacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
     |||| | | ||||| ||||| ||||  || ||   ||||||||| ||||| |||| ||||||||| |||||    
T  31672479 ttacaaaaaatttcaaaaaaagttaccttttaaaggtcttaaagagtgccccgggggcactcgttaacattt 31672550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 7581272 - 7581174
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaag 232  Q
    ||||||| ||| ||||||  |||||| | ||||||||||||||| |||| ||| |||||||  ||||| || |||| |||||||| ||||| |||||||    
T  7581272 aaatttagaaattattccaacaaaaaatcaaatattacaaattctaatgtattaaatacacgaatttttatgaaaacttactattaaagatacttaaag 7581174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 266
Target Start/End: Complemental strand, 2918737 - 2918557
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||| ||||||| |||||||   |||  |||||||||| ||  ||||||||| || ||||  || |||| || || ||||| || ||||||||||||     
T  2918737 aagggttttgttaacgagtgcctttggggtactctttaagcatttcaaatttaataattattttttaaaaatgtcaactattataatttccaatgcattt 2918638  T
Q  188 aatacacagattttcat--aaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcatttatcatt 266  Q
    ||||||||  |||||||  |||| ||||| ||| || || |||||||| ||||||  ||| |||||||| ||||| |||||    
T  2918637 aatacacaacttttcattaaaaattttacaatttaaaatgcttaaagagtgccctaaggatactcgttaacatttttcatt 2918557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 24173176 - 24173277
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||| |||| |||||||| ||| ||||  ||  |||| |||||| ||||||||||||||||||| | |||| | ||||||| ||||  ||||||    
T  24173176 cactctttaacgatctcaaatttagaaaatattttttttaaaaattaaatgttacaaattccaatgcattaattacaaatattttcaaaaaaccttacta 24173275  T
Q  217 tt 218  Q
    ||    
T  24173276 tt 24173277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 31889649 - 31889709
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttact 215  Q
    ||||||| ||||||| ||| ||| |||||||||| |||||| ||||||||||||| |||||    
T  31889649 aaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 231350 - 231425
Alignment:
Q  179 aatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgtta 254  Q
    |||||||||| || | || ||||||| |||| |||||||| | |||||||||||| ||| | ||||||||||||||    
T  231350 aatgcattgattataaagtttttcattaaaacttactattaatgattcttaaagagtgctccggggacactcgtta 231425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 15547193 - 15547130
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||||||||||||| ||| |||  |||||||| ||  |||||||||||||| |||||||    
T  15547193 aaaaagttaaatattacaatttctaatatattgaatatactaattttcataaaaatatactatt 15547130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 2827689 - 2827583
Alignment:
Q  103 gagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttc 202  Q
    ||||| || |||| |||||||||| ||| ||||||||| ||| ||||  || | ||||| |||| |||||| || ||||||||||| | |||| |||||     
T  2827689 gagtgtccccggggcactctttaaagattccaaatttagaaaatattatttaagaaagtcaaatgttacaagtttcaatgcattgattgcacaaatttta 2827590  T
Q  203 ataaaaa 209  Q
    |||||||    
T  2827589 ataaaaa 2827583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 7606943 - 7606989
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagatttt 201  Q
    ||||| |||||||||||||||| ||||||||| |||||||| |||||    
T  7606943 aaaaaattaaatattacaaatttcaatgcattaaatacacatatttt 7606989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 8221155 - 8221261
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcat-aaaaatttactattgaagattcttaaagaatgccctggggacactcgtt 253  Q
    ||||||| || |||||||| || ||||||||| ||||||||  |||| || ||||| |||||||| || || |||||||||||| | || ||||||| ||    
T  8221155 aaaaagtcaactattacaactttcaatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaaagaatgctccggagacactcatt 8221254  T
Q  254 agcattt 260  Q
    | |||||    
T  8221255 aacattt 8221261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 20721349 - 20721245
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    |||||| ||| |||||  || ||||||||||| ||| ||| || ||||| ||||||| |||| |||| |||||||  ||||||||  | |||||||||||    
T  20721349 aaattttaaatgtatttatttaaaaagttaaacatttcaattttcaatgtattgaatgcacatatttccataaaatattactattttaaattcttaaaga 20721250  T
Q  234 atgcc 238  Q
     ||||    
T  20721249 gtgcc 20721245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 30370967 - 30370872
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaattta 213  Q
    ||||||||||||||    |||||||||||||||  ||  |||||| |||| ||| ||||| |||||  |||| |||||||||||| |||||||||||    
T  30370967 cactctttaaggatttttaatttaaaaagtattttttataaaagtcaaat-ttataaatttcaatgtcttgattacacagattttaataaaaattta 30370872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 27734478 - 27734360
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||| ||| ||| |||||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  27734478 gggttttgctaacgagtgcccccggatcactctttaaggatcccaaatttagaaattattccttcaaaaagtctaatattacaaattccaatgcattgaa 27734379  T
Q  190 tacacagattttcataaaa 208  Q
    ||||| |||||||||||||    
T  27734378 tacacggattttcataaaa 27734360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 260
Target Start/End: Original strand, 24733140 - 24733310
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||| ||||||| ||||| || ||||  ||||||||||||||||||||||||||| |||||  | ||||||| |||| ||||||||| || ||||||||     
T  24733140 gggtgttgttaacgagtgtccccgggatactctttaaggatcccaaatttaaaaaatattctctaaaaaagtcaaatgttacaaattacagtgcattgat 24733239  T
Q  190 tacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||| ||||| ||||||| |||||||| ||| | |||||||| ||||| || ||||||||||| |||||    
T  24733240 tacacaaatttttataaaaacttactattaaaggtacttaaagagtgccccggagacactcgttaacattt 24733310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 35210067 - 35209927
Alignment:
Q  93 tcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatac 192  Q
    |||||||||||||||||| |  | ||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||| ||| |  ||    
T  35210067 tcttgttaatgagtgccctcaagacactctttaaggatctcaaatttaaaaaatattccttaaaaaagttaaatgttacaaattccaatgtattaatcac 35209968  T
Q  193 acagattttcataaaaatttactattgaagattcttaaaga 233  Q
    ||| ||||| ||||||| || ||||| ||| ||||||||||    
T  35209967 acaaattttaataaaaacttcctattaaaggttcttaaaga 35209927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 39691252 - 39691083
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||| ||||||| |||||||| || | ||||||||||| || ||| ||| ||||| ||||| || ||||||| ||||| | ||| || ||||||||||||    
T  39691252 gggttttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaa 39691153  T
Q  190 tacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||| ||||||||||||| |||||||| ||||| |||||||||| ||| || |||||| |||| |||||    
T  39691152 tacacaaattttcataaaaaattactatttaagatccttaaagaataccc-ggagacacttgttaacattt 39691083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 28207590 - 28207711
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| |||||||| || | ||||||||||| ||||||||||||| ||  |||| || ||||||| || |||||||| ||||||||||||     
T  28207590 aagggtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattc 28207689  T
Q  188 aatacacagattttcataaaaa 209  Q
    ||||||||  ||||||| ||||    
T  28207690 aatacacaacttttcattaaaa 28207711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 44960502 - 44960583
Alignment:
Q  161 ttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctgg 242  Q
    |||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||| ||  | |||||||| ||||||||    
T  44960502 ttaaatattacaaatttcaatgcattgattacataaattttcataaaaatttactattaaaagtgcttaaagagtgccctgg 44960583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 3146003 - 3146100
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcatt 186  Q
    |||||||| ||||| |||||||| |||||||||||| ||| |||||| |||||  || ||||| || |||||||||| |||||||| ||||||||||||    
T  3146003 aagggtctcgttaacgagtgccctcgggtcactctt-aagcatcccatatttagtaattattcttttaaaaagttaactattacaatttccaatgcatt 3146100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 9200006 - 9200154
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||| ||| | ||| ||||||||||||||||||||||||||| |||| ||  ||||| | |||| |||||||||| |||||| | |     
T  9200006 gggtcttgttaacgagtacccccaggt-actctttaaggatcccaaatttaaaaaatatttctcaaaaaaatcaaatgttacaaattcaaatgcactaat 9200104  T
Q  190 tacacagattttcataaaaatttactattgaagattcttaaagaatgccc 239  Q
    || ||| |||||  ||||||||| | ||| ||| | |||||||| |||||    
T  9200105 tatacaaatttttgtaaaaatttgccattaaaggtgcttaaagagtgccc 9200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 8674455 - 8674519
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatg 182  Q
    ||||||||||||||||||||||||||| ||||  || |||||||||||| |||||||||| ||||    
T  8674455 actctttaaggatcccaaatttaaaaaatattttttaaaaaagttaaatgttacaaattctaatg 8674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 29217560 - 29217644
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||| ||| |||| ||| |||| || |||||||||||||||||||||| ||| ||||||||||||| |||||| || |||||    
T  29217560 aaatttagaaaatatttcttaaaaaggtcaaatattacaaattccaatgcagtgattacacagattttcgtaaaaaatttctatt 29217644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 37813519 - 37813423
Alignment:
Q  112 cgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaa-gttaaatattacaaattccaatgcattgaatacacagattttcataaa 207  Q
    |||| ||||||||||||||||||||||||  || ||||| || ||||| || ||  ||||||| |||||||||||||||||||||  ||||||||||    
T  37813519 cggggcactctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcataaa 37813423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 42636505 - 42636385
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||||||| |||||| | |||| ||||||||||| ||||||||||||  || ||||  |  ||||||| || |||||||| || ||||||||| |    
T  42636505 agggtcttgttaaggagtgctcccggggcactctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcattta 42636406  T
Q  189 atacacagattttcataaaaa 209  Q
    |||||||  ||||||| ||||    
T  42636405 atacacaacttttcattaaaa 42636385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 10893528 - 10893450
Alignment:
Q  131 cccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    |||||||||||||| ||||| |||||||||| |||||||| ||||| ||||||| | |||||||  ||||| |||||||    
T  10893528 cccaaatttaaaaattattcattcaaaaagtcaaatattataaatttcaatgcactaaatacacgaatttttataaaaa 10893450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 7574319 - 7574226
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaat 181  Q
    |||||||||||||| |||||| | |||| |||| |||||||| |||||||||| ||| |||| ||| ||||| | |||| ||||||||| ||||    
T  7574319 aagggtcttgttaacgagtgctcccggggcactatttaaggaacccaaatttagaaaatatttcttaaaaaaatcaaatgttacaaatttcaat 7574226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 44042504 - 44042633
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||| ||||||| ||||||||   || |||||||||||||| |  |||| | ||| ||||| || |||||||| |||| | ||| ||||||||||||||    
T  44042504 agggttttgttaacgagtgccctaaggacactctttaaggattcataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcattga 44042603  T
Q  189 atacacagattttcataaaaatttactatt 218  Q
    || |||| ||||  ||||||| ||||||||    
T  44042604 atgcacaaatttctataaaaacttactatt 44042633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 25163134 - 25162988
Alignment:
Q  116 tcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttact 215  Q
    |||||||||||| || | ||||| ||||| ||||| |  ||||||| ||||||| ||| |||||||||||  | || | | | ||||||||||||||||     
T  25163134 tcactctttaagtattcaaaattaaaaaattattcttagaaaaagtcaaatatttcaatttccaatgcataaattaaataaactttcataaaaatttaca 25163035  T
Q  216 attgaagattcttaaagaatgccctggggacact--cgttagcattt 260  Q
    |||  |||| ||||| |||||||||| || ||||  |||||||||||    
T  25163034 attttagatgcttaacgaatgccctgagggcactcacgttagcattt 25162988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 260
Target Start/End: Original strand, 31264964 - 31265135
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||||||| ||||||||  | | ||||||||||| || | |||||   ||  ||||| || ||||||| ||| | | ||| |||||||| ||| |    
T  31264964 agggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacaattcaatttccaatgtattaa 31265063  T
Q  189 atacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||||  |||||||||||| ||||||||  ||  ||||||||| ||||| |||  ||||||||| |||||    
T  31265064 atacacaagttttcataaaaagttactattttaggctcttaaagagtgccccgggagcactcgttaacattt 31265135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 167955 - 167886
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcatt 186  Q
    ||||||||||| ||| |||||||||||| ||||| || ||||||| || ||||| || ||||||||||||    
T  167955 cactctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatt 167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 25279961 - 25280065
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgtta 254  Q
    ||||||| ||||| | ||| |||||||| ||| |||||| |  |||||||||||||||||||||  ||  ||||||||| ||||| |||| |||||||||    
T  25279961 aaaaagtcaaataattcaatttccaatgtattaaatacataagttttcataaaaatttactattttaggctcttaaagagtgcccagggg-cactcgtta 25280059  T
Q  255 gcattt 260  Q
     |||||    
T  25280060 acattt 25280065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 27633701 - 27633644
Alignment:
Q  156 aaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaattta 213  Q
    |||||||||||||||||||||  ||||||||||||| ||  ||| |||||||||||||    
T  27633701 aaaagttaaatattacaaattgtaatgcattgaatatactaattctcataaaaattta 27633644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 260
Target Start/End: Original strand, 12002237 - 12002405
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaata 191  Q
    |||||||||| ||||  || |||| ||||||||||| || | ||||| |  || ||||| || |||| || |||  || ||| |||||||||| ||| ||    
T  12002237 gtcttgttaacgagtatcctcggggcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcactgatta 12002336  T
Q  192 cacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||| ||||| ||||||| |||||||| ||||| |||||  | ||||| | ||||||| |||| |||||    
T  12002337 cacaaatttttataaaaagttactatttaagatccttaaccagtgccccgtggacactagttaacattt 12002405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 260
Target Start/End: Complemental strand, 37564468 - 37564300
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaata 191  Q
    |||||||||| |||||||   ||| ||||||||||  || | ||||| | ||| ||||| || ||||||| ||||| | ||| |||||||| ||| ||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaatagttcaatttccaatgtattaaata 37564369  T
Q  192 cacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||||  |||||||||||  ||||||||  |   ||||||||||||| | | || ||||||||| |||||    
T  37564368 cacaagttttcataaaaggttactattctaagctcttaaagaatgctccgtgggcactcgttaacattt 37564300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 2258202 - 2258115
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcat 204  Q
    ||||||||||| ||||||||||||| || ||||| || ||||||||||  ||||||| ||  |||| ||| ||||||||  |||||||    
T  2258202 cactctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaacttttcat 2258115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 1876622 - 1876496
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||| ||||||||| |||||||| |||| ||||||||||| || | ||||| |  || ||||| || |||| || |||  || ||| |||||||||| ||    
T  1876622 aaggttcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcactg 1876523  T
Q  188 aatacacagattttcataaaaatttac 214  Q
    | |||||| | ||||||||||| ||||    
T  1876522 attacacaaactttcataaaaaattac 1876496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 20279695 - 20279589
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||||||||||||  ||||||| |||| ||||||||||| || | ||| | |  || ||||| |||||||||| ||||||| ||| || |||| ||||     
T  20279695 aagggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaatacatta 20279596  T
Q  188 aatacac 194  Q
    |||||||    
T  20279595 aatacac 20279589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 21066322 - 21066216
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||||||||||||  ||||||| |||| ||||||||||| || | ||| | |  || ||||| |||||||||| ||||||| ||| || |||| ||||     
T  21066322 aagggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaatacatta 21066223  T
Q  188 aatacac 194  Q
    |||||||    
T  21066222 aatacac 21066216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 16459255 - 16459360
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    ||||||||||| ||||| |  ||||||| |||| ||||||||| |||||||     ||||||  |||||||||||| |||||||| ||| | ||||||||    
T  16459255 aaatttaaaaaatattcttaaaaaaagtcaaatgttacaaatttcaatgcacgagttacacaatttttcataaaaacttactattaaaggtgcttaaaga 16459354  T
Q  234 atgccc 239  Q
     |||||    
T  16459355 gtgccc 16459360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 37426387 - 37426436
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaattt 139  Q
    |||||||||||| ||||||||  ||| ||||||||||| |||||||||||    
T  37426387 gggtcttgttaacgagtgcccctgggacactctttaagcatcccaaattt 37426436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 41106124 - 41105967
Alignment:
Q  102 tgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagatttt 201  Q
    |||||||||  ||| |||| ||| ||||| ||||||| | ||| || || || ||||||| ||||| | ||| || ||||||||||||| ||||  ||||    
T  41106124 tgagtgcccctggggcactgtttgaggattccaaattaagaaattaatcattaaaaaagtcaaatagttcaattttcaatgcattgaattcacaattttt 41106025  T
Q  202 cataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcatt 259  Q
    | |||||| |||| ||| ||| | |||||||| | ||| ||||  |||||| ||||||    
T  41106024 cgtaaaaacttaccatttaaggtccttaaagagtaccccgggggtactcgtcagcatt 41105967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 42907633 - 42907537
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    |||| ||||||||||  | ||||| ||| ||||| || ||||||| ||| | ||||||||  ||||||||| |||| || ||||||||||||||||||    
T  42907633 cactgtttaaggatcatagatttagaaattattcatt-aaaaagtcaaacactacaaattttaatgcattgcatacccatattttcataaaaatttac 42907537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 40852141 - 40852101
Alignment:
Q  178 caatgcattgaatacacagattttcataaaaatttactatt 218  Q
    |||||||||||||| ||| ||||||||||||| ||||||||    
T  40852141 caatgcattgaatatacatattttcataaaaacttactatt 40852101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 46726109 - 46726273
Alignment:
Q  94 cttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaataca 193  Q
    |||||||| |||||||| |||| |||||||||||||| ||||||||||||| ||||| || ||||||| |||| ||||||||| ||||||||||| ||||    
T  46726109 cttgttaacgagtgcccccggg-cactctttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattaca 46726207  T
Q  194 cagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
     || ||||||||||||||||||||| | | || ||||||||||||  |||| ||||||||| |||||    
T  46726208 tagtttttcataaaaatttactattaatggtttttaaagaatgccacgggg-cactcgttaacattt 46726273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 27123242 - 27123412
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||||||| |||| ||||||||||| ||||||||||||  ||  |||| || ||||||| || |||||||| |||||||||||| |     
T  27123242 gggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaag 27123341  T
Q  190 tacacagattttc-ataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcatt 259  Q
    ||||||  |||||  |||||| |||| ||| ||  | |||||||| ||||| |||| ||||||||| ||||    
T  27123342 tacacaacttttcgttaaaaacttaccatttaaagtgcttaaagagtgccccgggggcactcgttaacatt 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 2347413 - 2347528
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactat 217  Q
    |||||| |||||| |||||||||  || |||||||  ||||| | |||||||||||||| ||||||||||| |||| | ||||| |||||||||||||||    
T  2347413 actcttaaaggattccaaatttagtaaatattcctcaaaaaaatcaaatattacaaatttcaatgcattgattacataaattttaataaaaatttactat 2347512  T
Q  218 tgaagattcttaaaga 233  Q
    | ||| | ||||||||    
T  2347513 taaaggtgcttaaaga 2347528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 28770445 - 28770574
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||||||  |||| ||||||||||| |||||||| |||  || ||||| ||  |||||| || |||||||| |||||||||||| ||    
T  28770445 gggtcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaa 28770544  T
Q  190 tacacagattttca-taaaaatttactatt 218  Q
    ||||||  |||||| |||||| ||||||||    
T  28770545 tacacaacttttcattaaaaacttactatt 28770574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 22618805 - 22618730
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacaca 195  Q
    ||||||||||||||||||||||||| |||| |||||||| || || |||||||| || ||||||||||| ||||||    
T  22618805 tctttaaggatcccaaatttaaaaattatttcttcaaaatgtcaactattacaattttcaatgcattgactacaca 22618730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 36939466 - 36939558
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    |||||||||||||||  ||||||||||| |||||||  ||||||| |||| ||||||||| || |||||| | |||||| |||| ||||||||    
T  36939466 cactctttaaggatcttaaatttaaaaaatattcctcaaaaaagtcaaatgttacaaatttcagtgcattaattacacaaatttacataaaaa 36939558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 47639184 - 47639280
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||||| ||||||||||| ||||| || ||||| |||||| |||||||||  |||| ||||| ||||||  |||| |||||| |||||||||    
T  47639184 tttaaggatcctaaatttaaaaaatattctttaaaaaaattaaatgttacaaattttaatgtattgattacacaattttttataaaagtttactatt 47639280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 7723312 - 7723444
Alignment:
Q  124 taaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaaga 223  Q
    |||| |||||||||||||||| ||||  |||||||||||||||||||   |||  ||||||||||||| ||| ||||| ||||||| ||| ||||  ||     
T  7723312 taagaatcccaaatttaaaaa-tatttattcaaaaagttaaatatta---attttaatgcattgaatatacaaatttttataaaaacttattattagagg 7723407  T
Q  224 ttcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||||||| || || | | |||||||||||||| ||||    
T  7723408 ttcttaatgagtgtcattgggacactcgttagtattt 7723444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 2959685 - 2959584
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||||||||  ||||| ||||| ||||  || |||||||||||| ||| |||||  |||||||||| |||| |  |||||||||||||||| ||    
T  2959685 cactctttaaggatcataaattaaaaaaatattttttgaaaaagttaaatgttataaattttaatgcattgattacataatttttcataaaaatttatta 2959586  T
Q  217 tt 218  Q
    ||    
T  2959585 tt 2959584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 36061575 - 36061470
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgtta 254  Q
    ||||||| ||||| ||| | ||||||||||||||||||||| |||||| |||| | ||| |||| ||||| |||| ||| | ||| |||| ||||||||     
T  36061575 aaaaagtcaaatactactatttccaatgcattgaatacacaaattttcctaaagacttaatatttaagatccttatagagtcccccgggggcactcgttg 36061476  T
Q  255 gcattt 260  Q
    ||||||    
T  36061475 gcattt 36061470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 260
Target Start/End: Original strand, 35731282 - 35731425
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaa-aatttact 215  Q
    ||||||||||| || |||||||||| || ||||| || ||||||| || |||||||| |||||||||| | ||||||||  |||| ||||| || |||||    
T  35731282 cactctttaagcataccaaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttact 35731381  T
Q  216 attgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    | | ||  | |||||||| ||||| |||| ||||||||| |||||    
T  35731382 aattaaagtgcttaaagagtgccc-gggggcactcgttaacattt 35731425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 10032057 - 10031942
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaata 191  Q
    |||| ||||| |||||||| |||| ||||||||||| || ||||| |||  || ||||  || |||||||||||| || | | |||||||||||||| ||    
T  10032057 gtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgatta 10031958  T
Q  192 cacagattttcataaa 207  Q
    ||||  ||||||||||    
T  10031957 cacactttttcataaa 10031942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 35833852 - 35833761
Alignment:
Q  123 ttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    |||| |||| |||||||| |||| ||| ||| ||||||| ||| ||| |||||| ||||||||||| |||||| |||||||| |||| ||||    
T  35833852 ttaaagatctcaaatttagaaaggatttctttaaaaagtcaaacatttcaaatttcaatgcattgagtacacatattttcatgaaaacttac 35833761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 39156032 - 39156139
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    ||||||||||  |||| ||| ||||||| |||||||  ||||| ||||||| | |||| |  ||||||||||||||||||||||| ||| |  |||||||    
T  39156032 aaatttaaaagttatttctttaaaaagtcaaatattttaaatttcaatgcacttaatatatggattttcataaaaatttactattaaaggtctttaaaga 39156131  T
Q  234 atgccctg 241  Q
    ||| ||||    
T  39156132 atgtcctg 39156139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 36189474 - 36189576
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaa-gttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttact 215  Q
    |||| ||||||||||||||||||| ||| |||||  | ||||| |  ||||||| |||||||||||  ||||| |||||| ||||||||||||| ||| |    
T  36189474 cactttttaaggatcccaaatttagaaaatattctataaaaaaagccaaatattgcaaattccaatatattgattacacatattttcataaaaacttatt 36189573  T
Q  216 att 218  Q
    |||    
T  36189574 att 36189576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 39321093 - 39321001
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||||||| || |||||||||| || ||||| || ||||||| || |||||||| || ||||| ||| ||||||||  |||| |||||||    
T  39321093 cactctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaa 39321001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 20397542 - 20397479
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||||| ||| ||| || ||||||||||||| |||| ||||||||||||  ||||||||    
T  20397542 aaaaagttaaacatttcaattttcaatgcattgaatgcacacattttcataaaatattactatt 20397479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 260
Target Start/End: Original strand, 43234758 - 43234928
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||||| | |||| || |||||||| |||| | |||||  || ||||| || ||||| | || |||||||| ||||| | |||| ||    
T  43234758 gggtcttgttaacgagtgctctcgggacattctttaagcatcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaa 43234857  T
Q  190 tacacagattttca-taaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||| |  |||||| ||||||||||||||| ||  | |||||||| ||||| | || ||||||||| |||||    
T  43234858 tacataacttttcattaaaaatttactatttaaagtgcttaaagagtgccc-gagggcactcgttaacattt 43234928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 44543728 - 44543831
Alignment:
Q  128 gatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattct 227  Q
    |||| |||||||||||| |||||  | |||| || |||| ||| |||||| |||||||||| ||||||  |||| ||||||| || ||||| | ||||||    
T  44543728 gatctcaaatttaaaaaatattctataaaaatgtcaaatgttataaattcaaatgcattgattacacatttttttataaaaaatttctattaatgattct 44543827  T
Q  228 taaa 231  Q
    ||||    
T  44543828 taaa 44543831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 6506436 - 6506366
Alignment:
Q  116 tcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcatt 186  Q
    ||||||||||||||||  ||||||||||| |||   ||||||||||||||||| |||| ||  ||||||||    
T  6506436 tcactctttaaggatcttaaatttaaaaattatctattcaaaaagttaaatataacaatttttaatgcatt 6506366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 24450576 - 24450518
Alignment:
Q  156 aaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    |||||| ||||||| | | ||||||||||||||||||||  ||||||||||| ||||||    
T  24450576 aaaagtaaaatatttcgatttccaatgcattgaatacacgcattttcataaatatttac 24450518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 31902831 - 31902718
Alignment:
Q  146 tattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctgggga 245  Q
    |||||||| | ||||| ||||||| ||| || |||| |||||| ||||||  ||| ||||||||||||||||| ||  | |||||||| ||| | ||||     
T  31902831 tattccttaagaaagtcaaatatttcaattttcaatacattgactacacaattttccataaaaatttactatttaaagtccttaaagagtgctc-ggggg 31902733  T
Q  246 cactcgttagcattt 260  Q
    ||||||||| |||||    
T  31902732 cactcgttaacattt 31902718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 47754560 - 47754475
Alignment:
Q  175 ttccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||||||||| ||||||   ||| |||||||||||||||||| ||   ||||||||| |||||  ||| ||||||||| |||||    
T  47754560 ttccaatgcattaaatacaataattctcataaaaatttactatttaaaggtcttaaagagtgccccaggggcactcgttaacattt 47754475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 3692887 - 3693022
Alignment:
Q  132 ccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcat--aaaaatttactattgaagattctta 229  Q
    |||||||||  || ||||| || ||||| | || |||||||| |||||||||| | ||||||||  |||||||  ||||| |||||| | || || ||||    
T  3692887 ccaaatttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatactta 3692986  T
Q  230 aagaatgccctggggacactcgttagcatttatcat 265  Q
    |||| ||||| ||  |||||||||| ||||| ||||    
T  3692987 aagagtgccccggaaacactcgttaacatttctcat 3693022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 22689000 - 22688944
Alignment:
Q  179 aatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaat 235  Q
    |||||||| ||||||||  || ||||||||| ||||||||  |||||||||||||||    
T  22689000 aatgcattaaatacacaagttgtcataaaaaattactattttagattcttaaagaat 22688944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 37352548 - 37352436
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaat 190  Q
    |||| ||||||||||||||  || | || ||||||||||| | |||   | ||| |||||| | ||||||| ||||||| ||| |||||||||||| | |    
T  37352548 ggtcatgttaatgagtgcctccgagacattctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaatt 37352449  T
Q  191 acacagattttca 203  Q
    ||||| |||||||    
T  37352448 acacaaattttca 37352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 40998431 - 40998371
Alignment:
Q  179 aatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccc 239  Q
    |||| ||| |||||||| ||||||||||||| ||||||||  ||| ||||||||| |||||    
T  40998431 aatgtattaaatacacaaattttcataaaaagttactattctagactcttaaagagtgccc 40998371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 260
Target Start/End: Original strand, 44537336 - 44537480
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttca-taaaaatttact 215  Q
    ||||||||||| |||||| |||||  || ||||| || ||||||| || ||||| || ||||| || ||  |||||| |  |||||| |||||| |||||    
T  44537336 cactctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttact 44537435  T
Q  216 attgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||| ||  | |||||||| ||||| |||| ||||||||| |||||    
T  44537436 atttaaagtgcttaaagagtgccccgggggcactcgttaacattt 44537480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 47371929 - 47371965
Alignment:
Q  197 attttcataaaaatttactattgaagattcttaaaga 233  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  47371929 attttcataaaaatttattattaaagattcttaaaga 47371965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 24762854 - 24762726
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| |||||||  | ||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||  ||||    
T  24762854 aagggtcttgttaacgagtgccttcaggtcactctttaaggatcccaaatttagaaaatattccttaaaaaagtcaaatattacaaattccaatatattg 24762755  T
Q  188 aatacacagattttcataaaaatttacta 216  Q
    | || ||| ||||| ||||||| ||||||    
T  24762754 attatacatatttttataaaaacttacta 24762726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 24765330 - 24765429
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||||||||||||||||| ||| |||||||| ||||| | |||||||||||||||||||||||||| |||||| ||||| |||| || ||||||    
T  24765330 cactctttaaggatcccaaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattgattacacatatttttataataacttacta 24765429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 20128300 - 20128426
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaata 191  Q
    ||||||| || |||||||| |||| |||||||||||||||| ||||||| ||  ||||| || ||||||| |||| ||||||||||||||||||||| ||    
T  20128300 gtcttgtaaacgagtgcccccgggacactctttaaggatcctaaatttataatttattctttaaaaaagtcaaatgttacaaattccaatgcattgatta 20128399  T
Q  192 cacagattttcataaaaatttactatt 218  Q
    |||  ||||| ||||||| || |||||    
T  20128400 cacgtatttttataaaaaatttctatt 20128426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 24791994 - 24792128
Alignment:
Q  127 ggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacaca-gattttcataaaaatttactattgaagatt 225  Q
    |||||||||||||| ||| ||||| || ||||||| |||| ||||||||||||||||||||| |||| |  ||||| ||||||| |||||||| | | ||    
T  24791994 ggatcccaaatttagaaaatattctttaaaaaagtcaaatgttacaaattccaatgcattgattacatataatttttataaaaacttactattaatggtt 24792093  T
Q  226 cttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||||| |||||| ||| ||||||||| |||||    
T  24792094 cttaaagagtgccctaggggcactcgttaacattt 24792128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 260
Target Start/End: Original strand, 35022619 - 35022744
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    ||||||||||| |||| ||| ||||||| |||||||| |||||  |||||||||| |||||| ||||| ||||||| |||| ||| | | | ||||||||    
T  35022619 aaatttaaaaaatatttcttaaaaaagtcaaatattataaattttaatgcattgattacacatattttaataaaaacttacaattaatggtccttaaaga 35022718  T
Q  234 atgccctggggacactcgttagcattt 260  Q
     |||||| ||||||||||||| |||||    
T  35022719 gtgccct-gggacactcgttaacattt 35022744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 13538363 - 13538507
Alignment:
Q  90 gggtcttgttaatgagtgcccgcg-ggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    |||||||||||| |||||||| || || ||||||||||| || | |||||  |||| ||||| || ||||| | ||||| | ||| ||||||||||||||    
T  13538363 gggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattga 13538462  T
Q  189 atacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    ||||| |  |||||||||||| |||||||| ||||  ||||||||    
T  13538463 atacataacttttcataaaaagttactatttaagacccttaaaga 13538507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 22440251 - 22440132
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagtt-aaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    |||||||| |||||||||||| ||| ||||| |||||||| || |||| |||||| || ||||||||||| |||| | ||||||||||||| ||||||||    
T  22440251 tctttaagcatcccaaatttagaaaatattc-ttcaaaaaattcaaatgttacaagtttcaatgcattgattacatatattttcataaaaacttactatt 22440153  T
Q  219 gaagattcttaaagaatgccc 239  Q
     ||| | |||||||| |||||    
T  22440152 aaaggtacttaaagagtgccc 22440132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 34234021 - 34233917
Alignment:
Q  129 atcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattctt 228  Q
    ||||||||||||  || |||| ||  ||||||| |||||||||||||| ||||||||||| |||||| ||||  |||||||||||||||| ||| | |||    
T  34234021 atcccaaatttagtaaatattactcaaaaaagtcaaatattacaaatttcaatgcattgattacacaaatttgaataaaaatttactattaaaggtgctt 34233922  T
Q  229 aaaga 233  Q
    |||||    
T  34233921 aaaga 34233917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 814996 - 815133
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaa 221  Q
    |||||| |||||||||||| ||| ||||  || ||||| | |||| | ||||||||||||||||||| ||||| |||||||||||||| ||||| || ||    
T  814996 tttaagcatcccaaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaatgcattgattacaccgattttcataaaaacttacttttaaa 815095  T
Q  222 gattcttaaagaatgccctggggacactcgttagcattt 260  Q
    | | ||| |||| |||||  | ||||||||||| |||||    
T  815096 ggtgctt-aagagtgccccagagacactcgttaacattt 815133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 1335024 - 1334903
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| ||||  |  |||| ||||||||||| ||||||||||||| || ||||| || ||||| | || |||||||| ||||||||||||     
T  1335024 aagggtcttgttaacgagtatctccggggcactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattc 1334925  T
Q  188 aatacacagattttcataaaaa 209  Q
    |||| |||  ||||||| ||||    
T  1334924 aatatacaatttttcattaaaa 1334903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 2713538 - 2713437
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||| ||||  ||||||  ||| ||||| |  ||||||| |||| ||||||||||||||||| ||| || |||||||||||| |||| ||||||    
T  2713538 cactctttaaagatcataaatttggaaaatattcttcaaaaaagtcaaatgttacaaattccaatgcaatgattatacagattttcatcaaaacttacta 2713439  T
Q  217 tt 218  Q
    ||    
T  2713438 tt 2713437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 14295626 - 14295715
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    |||||||| ||||||||||||  || ||||| || |||| ||||| |||||||| || ||||||||||||||||||  |||| |||||||    
T  14295626 tctttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttttataaaaa 14295715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 34896057 - 34895973
Alignment:
Q  124 taaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    |||| |||||||||||||||| ||||| || ||||| | |||||||||||||||  || ||||||||||||| ||||| |||||||    
T  34896057 taagaatcccaaatttaaaaattattcatttaaaaa-tcaaatattacaaattctgatacattgaatacacatatttttataaaaa 34895973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 44002480 - 44002356
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagatttt-cataaaaatttact 215  Q
    ||||||||||| ||   |||||||||||| |||| || |||||||||||  ||| ||||| ||||  ||| | |||||| ||||| ||||||||||||||    
T  44002480 cactctttaagaattttaaatttaaaaagaattctttaaaaaagttaaaagttataaatttcaatatattaattacacatatttttcataaaaatttact 44002381  T
Q  216 attgaagattcttaaagaatgccct 240  Q
    |||||| ||  ||||||| ||||||    
T  44002380 attgaatatgtttaaagagtgccct 44002356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 9153581 - 9153444
Alignment:
Q  121 ctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattga 220  Q
    |||||||||| ||||||| | ||| ||||| || ||||||  ||| | | ||| ||||||||||||||||||||| ||||| || |||| ||||||||      
T  9153581 ctttaaggattccaaattaagaaattattctttaaaaaaggcaaacacttcaatttccaatgcattgaatacacaaatttttat-aaaacttactatt-t 9153484  T
Q  221 agattcttaaagaatgccctggggacactcgttagcattt 260  Q
    || | |||||||  ||||| |||| |||||||||||||||    
T  9153483 aggtccttaaagtgtgccccgggggcactcgttagcattt 9153444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 20064878 - 20064997
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||||||| |||||||    || |||||||||||||||| |||| ||  || ||||| || ||||||| || |||||||| || ||||| ||| |    
T  20064878 agggtcttgttaacgagtgcctctagggcactctttaaggatcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtattaa 20064977  T
Q  189 atacacagattttcataaaa 208  Q
    |||||||  |||||||||||    
T  20064978 atacacaatttttcataaaa 20064997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 34898932 - 34899027
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||||||||   |||||||||| ||||  |||||||||| || |||||||||||      |||||||||||   ||||||||||||||||||||    
T  34898932 cactctttaaggatcttcaatttaaaaattattttttcaaaaagtcaattattacaaatt------cattgaatacatgaattttcataaaaatttacta 34899025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 39445542 - 39445424
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||| |||   ||||||||||| ||||  || |||||||||||| ||| ||||| ||||||| ||| ||||||| ||||| || ||| ||| ||    
T  39445542 cactctttaaagattttaaatttaaaaaatattttttaaaaaagttaaatgttagaaatttcaatgcactgattacacagtttttcttacaaacttaata 39445443  T
Q  217 ttgaagattcttaaagaat 235  Q
    || | | ||||||||||||    
T  39445442 ttaatggttcttaaagaat 39445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 8964416 - 8964477
Alignment:
Q  146 tattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaa 207  Q
    ||||| || ||||||| ||||||| ||| |||||||||||||| |||||| |||||||||||    
T  8964416 tattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaa 8964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 13081929 - 13082018
Alignment:
Q  112 cgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagatttt 201  Q
    |||| ||||||||||||||| |||||||| ||| || || || |||||||||| | |||||||||| ||| |||||| ||| ||| ||||    
T  13081929 cgggacactctttaaggatctcaaatttataaaataatcattaaaaaagttaagtgttacaaattctaatacattgattactcagttttt 13082018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 37978494 - 37978559
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||| ||||||||||||| ||| ||||| || ||||||| ||||||||||||||  |||||||||    
T  37978494 tttaaagatcccaaatttagaaaatattctttaaaaaagtcaaatattacaaattttaatgcattg 37978559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 4762318 - 4762446
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaat 190  Q
    ||||||||||| |||||| | ||| ||||| |||||| ||||||||||||  || ||||  || | ||||| || ||||| || || ||||||||| |||    
T  4762318 ggtcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaattattattttataaagtcaactattataattttcaatgcattcaat 4762417  T
Q  191 acacagattttca-taaaaatttactatt 218  Q
    |||||  |||| | |||||||||||||||    
T  4762418 acacaattttttattaaaaatttactatt 4762446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 15690282 - 15690190
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||||||||| | |||||| | ||| |||| ||  ||||| | ||||||||||||||  |||||||||| |||||| ||||| |||||||    
T  15690282 cactctttaaggaactcaaattaagaaaatatttctcaaaaaaatcaaatattacaaattttaatgcattgattacacatatttttataaaaa 15690190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 41073208 - 41073124
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||| ||| ||||| |||| ||| | |||||||| ||||| |||||||||||||| | | ||||||||||||| ||| ||||    
T  41073208 aaatttagaaattattctttcagaaaatcaaatattataaatttcaatgcattgaatatatatattttcataaaaacttattatt 41073124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 19890295 - 19890208
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    |||||| |||| |||||||  || ||||| || ||||||| || |||||||| |||||||||||| ||||||||  ||||||| ||||    
T  19890295 tttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaa 19890208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 4616871 - 4616916
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattt 200  Q
    ||||||||||||||||||| || ||||||||||| |||| ||||||    
T  4616871 aaaaagttaaatattacaattttcaatgcattgattacatagattt 4616916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 20683134 - 20683089
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaa 136  Q
    ||||||||||| |||||||| |||| |||||||||||||| |||||    
T  20683134 ggtcttgttaacgagtgcccccgggacactctttaaggattccaaa 20683089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 36866491 - 36866410
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagatt 199  Q
    |||||||||||| || ||||||| |||  |||  |||||||| | |||||||| ||||| ||||||||| |||||| |||||    
T  36866491 actctttaaggaacctaaatttagaaatgattgattcaaaaactcaaatattataaatttcaatgcattaaatacatagatt 36866410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 41544031 - 41544116
Alignment:
Q  175 ttccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||||||| |||||||| |  |||||||||||| ||| |||| ||||  |||||||| ||| | ||||| |||||||| |||||    
T  41544031 ttccaatgcaatgaatacataatttttcataaaaaattattatttaagacccttaaagagtgctccggggatactcgttaacattt 41544116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 43745667 - 43745772
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgtta 254  Q
    |||||| |||| ||| ||| || ||||||||||||| ||||  |||||||||||  ||||||||  | | ||||||||| ||||||  || |||||||||    
T  43745667 aaaaagctaaacatttcaattttcaatgcattgaatgcacacgttttcataaaaccttactattttaaactcttaaagagtgcccttagggcactcgtta 43745766  T
Q  255 gcattt 260  Q
     |||||    
T  43745767 acattt 43745772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 11944984 - 11944892
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    |||||||||||||||| || ||||  || ||||  |  |||| || || |||||||| || ||||||||||||||||||  ||||||||||||    
T  11944984 cactctttaaggatcctaattttagtaattatttttaaaaaatgtcaactattacaattttcaatgcattgaatacacaacttttcataaaaa 11944892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 18734376 - 18734448
Alignment:
Q  146 tattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    |||||||| |||||||| || | | ||| |||| || |||||||| ||||  |||||||||||||||||||||    
T  18734376 tattccttaaaaaagtttaacacttcaatttccgatacattgaatgcacaatttttcataaaaatttactatt 18734448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 37993090 - 37993194
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcat-aaaaatttactattgaagattcttaaag 232  Q
    |||||||| || ||||| |||||||| | || |||||||| || ||||||||| |||||| |  |||| || |||||||||||||| || ||  ||||||    
T  37993090 aaatttaataactattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaaatgtttaaag 37993189  T
Q  233 aatgc 237  Q
    |||||    
T  37993190 aatgc 37993194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 31072608 - 31072437
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||||||| |||| |||||||||||||||  ||||||| ||| ||||| || ||||||| |||| ||||||||||| |||||||||     
T  31072608 gggtcttgttaacgagtgcccccgggccactctttaaggatcataaatttagaaaatattctttgaaaaagtcaaatgttacaaattcctatgcattgat 31072509  T
Q  190 tacacagattttcat-aaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||||||| |||| || ||||| ||| |||| | |||||||||||| ||||| || | ||||||||| |||||    
T  31072508 tacacagttttttataaaaaagttaatattaatgattcttaaagagtgccccggaggcactcgttaacattt 31072437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 13800807 - 13800691
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||||||||| ||||||| ||| ||||| || ||||||| |||||||||||||||| || |||||| ||||||| |||||||| ||| ||||||    
T  13800807 cactctttaaggatcctaaatttagaaaatattctttaaaaaagtcaaatattacaaattcctatacattgattacacagtttttcatagaaagttacta 13800708  T
Q  217 ttgaagattcttaaaga 233  Q
    || | | ||||||||||    
T  13800707 ttaatggttcttaaaga 13800691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 8297837 - 8297989
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| |||||||| |||| ||||||||||| ||||||||||||  || ||||| || |||| || || | |||||| ||||||||||||     
T  8297837 aagggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattc 8297936  T
Q  188 aatacacagattttca-taaaaatttactattgaagattcttaaagaatgccc 239  Q
    ||||||||  |||||| |||||| |||||||| ||  | |||||||| |||||    
T  8297937 aatacacaatttttcattaaaaacttactatttaaagtgcttaaagattgccc 8297989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 51834881 - 51835011
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||||||||||||  || |||| ||||||||||| |||| |||||||  || ||||| || ||||||| || ||||| || |||||||||||| |    
T  51834881 agggtcttgttaatgagtttccccgggacactctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaa 51834980  T
Q  189 atacacagattttca-taaaaatttactatt 218  Q
    |||||||  |||||| |||||||||||||||    
T  51834981 atacacaacttttcattaaaaatttactatt 51835011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 32693061 - 32692920
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaa-gttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||| |||||||||| |||||| |||||||| ||||| | ||||| ||||||||| |||| |||||| |||||| ||||||||||||| ||||||||    
T  32693061 tctttaaagatcccaaatataaaaaatattccttaaaaaaaggtaaatgttacaaatttcaatacattgattacacatattttcataaaaacttactatt 32692962  T
Q  219 gaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
     | | | |||||||| || || || | ||||||||| |||||    
T  32692961 aatggtccttaaagagtgtcccggaggcactcgttaacattt 32692920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 40667401 - 40667318
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagatttt 201  Q
    |||||| ||||||| || ||||||||| ||||| |||||||| | |||||||||||||| ||||||||||||| ||||||||||    
T  40667401 actcttcaaggatctcagatttaaaaactattcattcaaaaaatcaaatattacaaattacaatgcattgaatgcacagatttt 40667318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 47461153 - 47461034
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||| |||||||||| |||||||||||| ||||  |  ||||| |||||||||| ||||| ||||| ||||| || | | ||||||||||||| ||||||    
T  47461153 cactttttaaggatctcaaatttaaaaaatattattaaaaaaaattaaatattataaatttcaatgtattgattatatatattttcataaaaacttacta 47461054  T
Q  217 ttgaagattcttaaagaatg 236  Q
    || || || |||||||||||    
T  47461053 ttaaaaatacttaaagaatg 47461034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 25115374 - 25115273
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    ||||||||||| |||| |||||||  || ||||  || |||||||||| |||||||| |||||||||| ||||||||||  |||| ||||||| ||||||    
T  25115374 cactctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaactttttataaaaacttacta 25115275  T
Q  217 tt 218  Q
    ||    
T  25115274 tt 25115273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 11260569 - 11260653
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||||| ||||| || ||||||| |||| ||||||||| ||||||| ||| |||| | ||||||||| ||||||||||||    
T  11260569 aaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcaatgattacatatattttcatataaatttactatt 11260653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 47040865 - 47040789
Alignment:
Q  108 cccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgca 184  Q
    |||||||  ||| |||||||||||| ||||||| ||||| |||||||||||||| || |||||||| ||||||||||    
T  47040865 cccgcggtgcacgctttaaggatccaaaatttagaaagtgttccttcaaaaagtcaactattacaatttccaatgca 47040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 48315925 - 48316021
Alignment:
Q  123 ttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattg 219  Q
    |||| ||||||||||||  ||| ||||| || ||||||| |||| ||||||||| ||||||||||| ||||||  |||||||||||| ||| |||||    
T  48315925 ttaacgatcccaaattttgaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacacaacttttcataaaaacttaatattg 48316021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 5799096 - 5798981
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactat 217  Q
    |||| |||||||||  ||||||| ||| ||||| || ||||||| ||||||||||||||  ||||| |||| || ||| ||||| ||||||||||| |||    
T  5799096 actccttaaggatcttaaatttagaaaatattcttttaaaaagtcaaatattacaaatttaaatgcgttgattatacaaatttttataaaaatttattat 5798997  T
Q  218 tgaagattcttaaaga 233  Q
    | ||| ||||| ||||    
T  5798996 taaaggttcttgaaga 5798981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 41370241 - 41370178
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||||||||| ||| || ||||||||||| |||||| ||||||||||||| ||||||||    
T  41370241 aaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactatt 41370178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 45900287 - 45900172
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||||||| || | ||||||||||| |||| |||||||  || ||||| || | ||||| || ||| |||| |||||||||||| ||    
T  45900287 gggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaa 45900188  T
Q  190 tacacagattttcata 205  Q
    ||||||  ||||||||    
T  45900187 tacacaacttttcata 45900172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 47741067 - 47741008
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaatt 176  Q
    ||||||||||| || |||||||| |||| || ||||||||||||||||||||||||||||    
T  47741067 cactctttaagaattccaaatttgaaaaatactccttcaaaaagttaaatattacaaatt 47741008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 7852655 - 7852517
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttca-taaaaatttact 215  Q
    ||||||||||| |||| |||||||  || ||||| || ||||| |||| |||||||| || ||||||||| ||||||||  |||||| |||||| |||||    
T  7852655 cactctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttact 7852556  T
Q  216 attgaagattcttaaagaatgccctggggacactcgtta 254  Q
    ||| ||  | |||||||| ||||| || | |||||||||    
T  7852555 atttaaagtgcttaaagagtgccccggtggcactcgtta 7852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 29256887 - 29256793
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    ||||||||||  ||||||||||| |||||||||||||| | |||||||| ||||| ||||||||| || |  || |||||||| |||| ||||||    
T  29256887 tttaaggatcataaatttaaaaattattccttcaaaaaataaaatattataaatttcaatgcattaaacattcatattttcatgaaaacttacta 29256793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 53391345 - 53391223
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    ||||||||||| || | ||||||| ||| ||||| |  || |||| |||| ||||||||| ||||||||||| | |||| ||||| |||| | |||||||    
T  53391345 cactctttaagaatactaaatttagaaaatattcttaaaagaagtcaaatgttacaaatttcaatgcattgattgcacatatttttataagagtttacta 53391246  T
Q  217 ttgaagattcttaaagaatgccc 239  Q
    || ||||| |||||||| |||||    
T  53391245 ttaaagatacttaaagagtgccc 53391223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 54552879 - 54552765
Alignment:
Q  95 ttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacac 194  Q
    ||||||| |||||||  |||| ||||||||||| |||| ||||||| ||| ||||| || |||| || |||| ||||||||||  || |||||| |||||    
T  54552879 ttgttaacgagtgcctccggggcactctttaagaatcctaaatttagaaaatattctttaaaaaggtcaaatgttacaaattcttatacattgattacac 54552780  T
Q  195 agattttcataaaaa 209  Q
    || ||||| ||||||    
T  54552779 agtttttcgtaaaaa 54552765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 14949071 - 14949006
Alignment:
Q  144 agtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||| || ||||||| |||| ||||||||| ||||||||||| |||||| |||||||||||||    
T  14949071 agtattctttaaaaaagtcaaatgttacaaatttcaatgcattgattacacaaattttcataaaaa 14949006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 35777839 - 35777718
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||||||||||||  ||||||  | ||  |||||||||  ||||||||||||  || ||||| || |||||||||| |||||||| ||| ||||||||     
T  35777839 aagggtcttgttaactagtgccttcaggatactctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattc 35777740  T
Q  188 aatacacagattttcataaaaa 209  Q
    ||||||||  ||||||| ||||    
T  35777739 aatacacaacttttcattaaaa 35777718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 41956565 - 41956440
Alignment:
Q  93 tcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatac 192  Q
    |||| |||| |||||||| | || ||||||||||| |  ||||| | | ||||||||| || | ||| ||||||||| ||| || ||| ||||||| |||    
T  41956565 tcttattaacgagtgcccccaggacactctttaagcaatccaaaataagaaagtattctttaagaaatttaaatatttcaattttcaacgcattgattac 41956466  T
Q  193 acagattttcataaaaatttactatt 218  Q
    |||  |||||||||||||||||||||    
T  41956465 acaatttttcataaaaatttactatt 41956440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 12618805 - 12618713
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||||||| || ||||||||| ||| ||||  || ||||||| |||| ||| ||||| ||||||||||| || ||| |||||||||||||    
T  12618805 cactctttaagcattccaaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaaaa 12618713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 31690353 - 31690479
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaata 191  Q
    |||||||||| ||| |||| |||| |||||||||| ||| |||||||||  || ||||  || ||||||| || | || ||| || ||||||||||||||    
T  31690353 gtcttgttaacgagcgcccccgggacactctttaacgattccaaatttattaattattattt-aaaaagtcaactgttgcaattttcaatgcattgaata 31690451  T
Q  192 cacagattttcataa-aaatttactatt 218  Q
    ||||  ||||||||| ||||||||||||    
T  31690452 cacaacttttcataagaaatttactatt 31690479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 41415857 - 41415746
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaa 221  Q
    ||||||||| |||||| || ||| ||||| || ||||||| | |  ||||||||| ||||||||||| || |||  |||| |||||||||||||||| |     
T  41415857 tttaaggattccaaatatagaaaatattctttaaaaaagtcacaagttacaaattacaatgcattgattaaacaattttttataaaaatttactattaat 41415758  T
Q  222 gattcttaaaga 233  Q
    | ||||||||||    
T  41415757 ggttcttaaaga 41415746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 8558404 - 8558490
Alignment:
Q  132 ccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    |||||||||||||  |||| |||||| ||| ||||||||| | |  |||||||| ||||||||  ||||||||||||||||| ||||    
T  8558404 ccaaatttaaaaaaaattcattcaaatagtcaaatattactactaacaatgcatcgaatacacgaattttcataaaaatttattatt 8558490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 24981760 - 24981865
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| ||||| ||  | | |||| ||||| |||  |||||||| ||| ||||| || |||||||||||  |||||||||| ||||||||||     
T  24981760 gggtcttgttaacgagtgtccctgagacactttttaaagatttcaaatttagaaaatattctttaaaaaagttaaacgttacaaattcaaatgcattgat 24981859  T
Q  190 tacaca 195  Q
    ||||||    
T  24981860 tacaca 24981865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 36112530 - 36112594
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatg 182  Q
    |||||||||||||||||||||| ||||| |||| ||| ||||| |||||| ||||||||| |||||    
T  36112530 cactctttaaggatcccaaattaaaaaaatatt-ctttaaaaaattaaatgttacaaatttcaatg 36112594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 49532389 - 49532261
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||||||| |||||||| |||| |||||| |||| || ||||||| | ||| |||| ||| | ||| | ||||| | ||| |||||||||||| |    
T  49532389 agggtcttgttaacgagtgcccccgggacactctgtaagcattccaaattaagaaattatt-ctttataaaatcaaataattcaatttccaatgcattaa 49532291  T
Q  189 atacacagattttcataaaaatttactatt 218  Q
    |||||||  |||| || |||| ||||||||    
T  49532290 atacacatgtttttattaaaagttactatt 49532261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 20394633 - 20394709
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaataca 193  Q
    ||||||||||| ||||||||||||  || ||||| || ||||||| || |||||||| ||||||| |||| ||||||    
T  20394633 cactctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaataca 20394709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 23016361 - 23016241
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||| ||| ||| |||| |||| |||||||| || || ||||||| | ||| ||||  || || |||| ||| ||| ||| ||||||||||||||    
T  23016361 agggtcttgctaacgagcgcccccggggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattga 23016262  T
Q  189 atacacagattttcataaaaa 209  Q
    ||||| ||| ||| |||||||    
T  23016261 atacatagacttttataaaaa 23016241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 53737939 - 53737827
Alignment:
Q  83 atatgaagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatg 182  Q
    |||||||| |||||| ||| |||||||| | || |||||||||||  | ||||| | | ||| ||||| || ||||| | ||||||| | | ||||||||    
T  53737939 atatgaagagtcttgctaacgagtgcccccagggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatg 53737840  T
Q  183 cattgaatacaca 195  Q
    |||||||||||||    
T  53737839 cattgaatacaca 53737827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 16556008 - 16556063
Alignment:
Q  163 aaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    |||||||||||||| ||||||||||| |||||| ||||| ||||||| ||| ||||    
T  16556008 aaatattacaaatttcaatgcattgattacacaaatttttataaaaacttattatt 16556063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 30624691 - 30624810
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    ||||||||||||||  ||||||| |||| ||||  || ||||||| |||  ||||||||| ||||||| | | |||| || |||||||||||| ||| ||    
T  30624691 cactctttaaggatttcaaattttaaaaatattgtttaaaaaagtcaaaagttacaaatttcaatgcactaattacatagtttttcataaaaacttatta 30624790  T
Q  217 ttgaagattcttaaagaatg 236  Q
    || | | || ||||||||||    
T  30624791 ttaatggtttttaaagaatg 30624810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 2063499 - 2063612
Alignment:
Q  146 tattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctgggga 245  Q
    ||||| || ||||||| ||| | | ||| |||||||| ||| |||||||| ||||||||||||| ||||||||  ||  ||||||||| ||| || ||||    
T  2063499 tattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaaattttcataaaaagttactattctaggctcttaaagagtgctct-ggga 2063597  T
Q  246 cactcgttagcattt 260  Q
    ||||| ||| |||||    
T  2063598 cactctttaacattt 2063612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 19652686 - 19652728
Alignment:
Q  175 ttccaatgcattgaatacacagattttcataaaaatttactat 217  Q
    |||||||||||||||| |||| ||||||||||||| |||||||    
T  19652686 ttccaatgcattgaatgcacaaattttcataaaaacttactat 19652728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 48097947 - 48098053
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||| |||||| || | ||||| | ||| ||||| || ||||||||||||| | ||| ||||||| |||| ||||||||  |||| ||||||| ||||||    
T  48097947 cactttttaagtattctaaattaagaaattattctttaaaaaagttaaatagttcaatttccaatacattaaatacacatgtttttataaaaagttacta 48098046  T
Q  217 ttgaaga 223  Q
    || ||||    
T  48098047 tttaaga 48098053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 12658257 - 12658333
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaat 210  Q
    ||||| ||||| ||||| || ||||| ||||||||||||| ||  |||||||| ||||||||  |||| ||||||||    
T  12658257 aaattaaaaaactattctttaaaaaatttaaatattacaatttttaatgcattaaatacacatgtttttataaaaat 12658333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 31429291 - 31429359
Alignment:
Q  136 atttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcat 204  Q
    ||||||||| ||||| || ||||| | || |||||||| |||||||||||| ||||||||  |||||||    
T  31429291 atttaaaaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttcat 31429359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 50086544 - 50086429
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaat 190  Q
    ||||||||||| |||||||| ||||  |||||||||  || ||||| | || || ||||| || ||||| | |||||||   | || |||||||||||||    
T  50086544 ggtcttgttaacgagtgccc-cgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaat 50086446  T
Q  191 acacagattttcataaa 207  Q
    ||||| |||||||||||    
T  50086445 acacatattttcataaa 50086429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 35229258 - 35229378
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| |||||||| |||| ||||||||||||| ||||||||||   | ||||| |||||||||| | ||||||||||||||||| |||||    
T  35229258 aagggtcttgttaacgagtgcccccgggacactctttaaggaacccaaatttagcgattattctttcaaaaagtcacatattacaaattccaatacattg 35229357  T
Q  188 aatacacagattttcataaaa 208  Q
    || |||||  |||||||||||    
T  35229358 aacacacaacttttcataaaa 35229378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 4806644 - 4806498
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaa-gttaaatattacaaattccaatgcatt 186  Q
    |||||||||||||| ||||| |  ||||  | ||||||| |||| ||||| |||||| |||||||| ||||| | ||||| ||||||||| |||| ||||    
T  4806644 aagggtcttgttaacgagtgtcttcgggatattctttaaagatctcaaatataaaaaatattccttaaaaaaaggtaaatgttacaaatttcaatacatt 4806545  T
Q  187 gaatacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    || |||||| ||||||||||||| |||||||| | | ||||||||||    
T  4806544 gattacacatattttcataaaaacttactattaatggttcttaaaga 4806498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 15588653 - 15588786
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattg 219  Q
    |||||||||||  |||||||| ||| ||||| || ||||| |||||| ||||||||| ||||||||||| |||| |  |||||||||||| ||||| ||     
T  15588653 tctttaaggatatcaaatttataaaatattctttaaaaaaattaaatgttacaaatttcaatgcattgattacataatttttcataaaaacttactgtta 15588752  T
Q  220 aagattcttaaagaatgccctggggacactcgtta 254  Q
    | |||||||||||| || || |||| |||||||||    
T  15588753 atgattcttaaagagtgtccagggg-cactcgtta 15588786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 6555149 - 6555050
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    ||||||||||  || | ||||||| |||||||||||| ||||||| |||| ||| ||||| ||||||||| | ||||| |||||| ||||||| ||||||    
T  6555149 cactctttaaatattctaaatttagaaagtattccttaaaaaagtcaaatgttataaatttcaatgcattaattacactgatttttataaaaacttacta 6555050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 2692569 - 2692440
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||||||||||||  ||||| | |||| ||||||||||| |||| |||||||  || ||||  || ||||||| || |||||||| |||||||| | ||    
T  2692569 aagggtcttgttaacaagtgcac-cgggacactctttaagaatccaaaatttagtaattattattttaaaaagtcaactattacaatttccaatgaagtg 2692471  T
Q  188 aatacacagattttcataaaaatttactatt 218  Q
    ||||||||  |||| || |||||||||||||    
T  2692470 aatacacaactttttattaaaatttactatt 2692440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 1479203 - 1479081
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||| |||||||||||||  ||  |||| || ||||||  || ||| |||| || ||||||||||||||||||  ||| ||||||||||||| |    
T  1479203 cactctttaaagatcccaaatttagtaatcattcttttaaaaaggcaattatgacaattttcaatgcattgaatacacaattttacataaaaatttacca 1479104  T
Q  217 ttgaagattcttaaagaatgccc 239  Q
    || ||  | |||||||| |||||    
T  1479103 tttaaagtgcttaaagagtgccc 1479081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 19293592 - 19293472
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    |||||||| |||| |||||  | |||| ||||||||||| |||| |||||||| || ||||  || |||||||||| |||||||| |||| ||||| | |    
T  19293592 agggtcttattaacgagtgttctcgggacactctttaagcatcctaaatttaacaattattattttaaaaagttaactattacaatttccgatgcactca 19293493  T
Q  189 atacacagattttcataaaaa 209  Q
    |||  ||  ||||||||||||    
T  19293492 ataaccaacttttcataaaaa 19293472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 2963253 - 2963352
Alignment:
Q  161 ttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||| ||||||||| ||||||| ||| || ||| |||||| |||||||||||| || ||| | |||||| | || || || ||||||||||| |||||    
T  2963253 ttaaatgttacaaatttcaatgcactgattatacaaattttcgtaaaaatttactgttaaaggtgcttaaaaagtgtccaggagacactcgttaacattt 2963352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 10346067 - 10345962
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgtta 254  Q
    ||||||||||| | | ||| || ||||||||||| |||| | ||| | | |||||||||||| | ||||||  |||| ||||||||  ||||||| ||||    
T  10346067 aaaaagttaaaaacttcaattttcaatgcattgattacataaattctaacaaaaatttactaattaagattactaaacaatgccctaaggacacttgtta 10345968  T
Q  255 gcattt 260  Q
    ||||||    
T  10345967 gcattt 10345962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 6586557 - 6586422
Alignment:
Q  87 gaagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcatt 186  Q
    ||||||||||||||| || |||||  ||| ||||||||||| || | |||||   ||| || || || ||||||| | ||| | ||| |||| |||||||    
T  6586557 gaagggtcttgttaacgattgccctgggg-cactctttaagcatactaaattaggaaattaatctttgaaaaagtcagatagttcaatttccgatgcatt 6586459  T
Q  187 gaatacacagattttcataaaaatttactattgaaga 223  Q
    ||| ||| | ||||||||||||| |||||||| ||||    
T  6586458 gaaaacataaattttcataaaaagttactatttaaga 6586422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 45775823 - 45775965
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| |||||  | |  | |||||||||||||||| ||||||||||| |||||||| |||||| ||||| ||||||||||||||||   |    
T  45775823 aagggtcttgttaacgagtggtcccatgacactctttaaggatcctaaatttaaaaaatattcctttaaaaagataaatgttacaaattccaatgc---g 45775919  T
Q  188 aatacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    | ||||||| |||||||||||| || ||||| | ||||||||||||    
T  45775920 attacacagtttttcataaaaacttgctattaatgattcttaaaga 45775965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 43025024 - 43024927
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    |||||||||||||||| | ||||||||| ||||  || ||||| |||||||||||||||| ||||||| ||| |||||  ||||||||||||||||||    
T  43025024 cactctttaaggatcctatatttaaaaaatattatttaaaaaaattaaatattacaaatttcaatgcactgattacacgtattttcataaaaatttac 43024927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 9964421 - 9964347
Alignment:
Q  146 tattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattga 220  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| ||||| |||||||||    
T  9964421 tattctttcaaaaagtaaaatattacaaattctaatgcattgaatacacaaatttacatgaaaatatactattga 9964347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 2864109 - 2864280
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| ||||| || |||| ||||||||||  |||||| |||||  || ||||| || ||||||| || |||||||| ||||||||||||     
T  2864109 aagggtcttgttaacgagtgtccccgggacactctttaaacatcccatatttaggaattattcttt-aaaaagtcaactattacaatttccaatgcattc 2864207  T
Q  188 aatacacagattttca-taaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||||||||  |||||| |||||| |||||||| ||  | |||||||| ||| | |||| ||||||||| |||||    
T  2864208 aatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccgggg-cactcgttaacattt 2864280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 46087064 - 46087183
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| | |||| | || | |||||||||||||||| ||||||| ||| ||||||| ||||||||||||| || || |||| |||||| ||    
T  46087064 aagggtcttgttaacgggtgctcccgag-cactctttaaggatcctaaatttagaaaatattcct-caaaaagttaaatgtttcacattctaatgcactg 46087161  T
Q  188 aatacacagattttcataaaaa 209  Q
    | || |||||||||||||||||    
T  46087162 attatacagattttcataaaaa 46087183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 27542856 - 27542948
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacag-attttcataaaaa 209  Q
    ||||||||||||| ||||||||||||| ||||| || ||||||| |||||||||| ||||||||| ||||| || ||||  ||||||||||||    
T  27542856 actctttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatattacatattccaatgtattgattatacagttttttcataaaaa 27542948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 39150550 - 39150670
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||||||| |||| ||||||||||| |||| |||||||  || ||||| |  ||||||| || |||||||| || ||||||||| ||    
T  39150550 gggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaa 39150649  T
Q  190 tacacagattttcataaaaat 210  Q
    |||| | |||||||| |||||    
T  39150650 tacataaattttcattaaaat 39150670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 27004129 - 27004018
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaa 221  Q
    ||||| ||||| ||||||||||| ||||  || |||||||||||| |||  |||| ||||||||||| ||||||  ||||| |||||||||| |||| |     
T  27004129 tttaaagatcctaaatttaaaaaatattttttaaaaaagttaaatgttatcaatttcaatgcattgattacacaatttttcttaaaaatttattattaat 27004030  T
Q  222 gattcttaaaga 233  Q
    ||||||||||||    
T  27004029 gattcttaaaga 27004018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 45640537 - 45640685
Alignment:
Q  112 cgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcat-aaaaat 210  Q
    |||| |||| || ||| ||||||||||||| || ||||| |||||||||| || ||||| || || ||||||||| | |||||| |||||||| |||||     
T  45640537 cgggacacttttaaagcatcccaaatttaagaactattctttcaaaaagtcaattattataattttcaatgcattcattacaca-attttcatcaaaaac 45640635  T
Q  211 ttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||||| || || |||||||| || |  |||||||||||||| |||||    
T  45640636 ttactatttaaaatgcttaaagagtgtctcggggacactcgttaacattt 45640685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 46803510 - 46803626
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||||||| || |||||| ||||||||  ||  |||||| |||  |||| |||| ||||||||||| |||||| |||||| |||||| ||||||    
T  46803510 cactctttaaggattcctaatttagaaagtattttttataaaagtcaaacgttactaatttcaatgcattgattacacatattttcttaaaaagttacta 46803609  T
Q  217 ttgaagattcttaaaga 233  Q
    || ||| | ||||||||    
T  46803610 ttaaaggtgcttaaaga 46803626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 9534368 - 9534483
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactat 217  Q
    ||||||||| ||||||||||||||||| | ||  || ||||||| |||||||| ||||| ||||||| | | |  ||| ||||||||||||||||| |||    
T  9534368 actctttaatgatcccaaatttaaaaaatgttatttaaaaaagtcaaatattataaatttcaatgcactaattttacaaattttcataaaaatttattat 9534467  T
Q  218 tgaagattcttaaaga 233  Q
    | ||| | ||||||||    
T  9534468 taaaggtgcttaaaga 9534483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 15458417 - 15458512
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaattta 213  Q
    ||||||||| |||| | |||||||||||||||| || |||||||||||| |||||||||  ||| |||||| |  ||| |||||| ||||||||||    
T  15458417 actctttaaagatctccaatttaaaaagtattctttaaaaaagttaaatgttacaaattataatacattgattgtacaaattttcgtaaaaattta 15458512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 26605027 - 26604951
Alignment:
Q  133 caaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    |||||||||||| ||||| || ||||||| || ||||||||||| |||| ||||| ||| ||| |||||||||||||    
T  26605027 caaatttaaaaattattcttttaaaaagtaaattattacaaatttcaatacattggatatacaaattttcataaaaa 26604951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 26756294 - 26756190
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattg 219  Q
    |||||||||| |  ||||||||||| ||||  || ||||||| |||||||||||| || |||||||| | ||| || |||||| |||||| ||||||||     
T  26756294 tctttaaggaccataaatttaaaaaatattatttaaaaaagtcaaatattacaaactctaatgcatttattactcaaattttcgtaaaaacttactatta 26756195  T
Q  220 aagat 224  Q
    |||||    
T  26756194 aagat 26756190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 39156227 - 39156334
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| ||||||||  | | ||||||||||| |||  |||||||  || ||||| || ||||||| || || ||||| ||||||||||||     
T  39156227 aagggtcttgttaacgagtgcccctgagacactctttaagcatcaaaaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattc 39156326  T
Q  188 aatacaca 195  Q
    ||||||||    
T  39156327 aatacaca 39156334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 14758525 - 14758655
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||||||| ||||| ||   || |||||||||| | |  | |||| | ||| |||||||| |||||||| || ||| ||| || | ||||||||    
T  14758525 aagggtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattattccttaaaaaagtttaacatttcaattttcgatgcattg 14758624  T
Q  188 aatacacagattttcataaaaatttactatt 218  Q
    ||| ||||  |||||||||||||||||||||    
T  14758625 aatgcacaatttttcataaaaatttactatt 14758655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 34232845 - 34232740
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| |||||| | |||| ||||||||||| ||||  ||||||  || ||||| || ||||||| || |||||||| || |||||| || ||    
T  34232845 gggtcttgttaacgagtgctcacgggacactctttaagcatccttaatttagcaattattcttttaaaaagtcaactattacaattttcaatgctttcaa 34232746  T
Q  190 tacaca 195  Q
    ||||||    
T  34232745 tacaca 34232740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 41649881 - 41649982
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||| ||||||| | || |||| ||||| |||||||| |||||||| || ||| ||| |||| ||||||||||| || |  ||| |||||||||||||||    
T  41649881 cactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttacta 41649980  T
Q  217 tt 218  Q
    ||    
T  41649981 tt 41649982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 39914743 - 39914639
Alignment:
Q  90 gggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaa 189  Q
    |||||||||||| ||||||   |||| ||||||||||| || |||||||||| || | ||| || ||||||| || |||||||| || ||||||| | ||    
T  39914743 gggtcttgttaacgagtgcttccgggacactctttaagcataccaaatttaacaattgttcttttaaaaagtcaactattacaattttcaatgcactcaa 39914644  T
Q  190 tacac 194  Q
    |||||    
T  39914643 tacac 39914639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 5115679 - 5115620
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    ||||||||||||||| ||| |||||||||||| | |||||| |||| || ||||||||||    
T  5115679 aaaaagttaaatatttcaatttccaatgcattaattacacaaatttacaaaaaaatttac 5115620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 260
Target Start/End: Complemental strand, 6983101 - 6982959
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    ||||||||||| || ||||||| | ||| ||||| || ||| ||| ||||||| ||| || |||||||||| ||||| | |||||||| | || |||| |    
T  6983101 cactctttaagtattccaaattaagaaattattcattaaaagagtcaaatatttcaattttcaatgcattggatacataaattttcat-ataacttacca 6983003  T
Q  217 ttgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||  || |||||||||| | ||| |||| ||||| |||||||||    
T  6983002 ttttaggttcttaaagagtaccccgggggcactctttagcattt 6982959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 35438102 - 35438048
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||||||| ||| | | ||||||||||||||||| ||| |||||||||||||    
T  35438102 aaaaagttaaacatttcgatttccaatgcattgaatatacatattttcataaaaa 35438048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 46592499 - 46592433
Alignment:
Q  198 ttttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcatttatca 264  Q
    |||||||||||| ||||||||  ||  ||||||||| ||| | |||||||||||||| |||||||||    
T  46592499 ttttcataaaaagttactattctaggctcttaaagagtgctccggggacactcgttaacatttatca 46592433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 47364116 - 47364038
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaaga 233  Q
    ||||||||||||||||  | ||| |||| | ||| |||||| |||||||||||||||||  ||| || |||||||||||    
T  47364116 aaaaagttaaatattaagatttctaatgaactgattacacaaattttcataaaaatttatcatttaaaattcttaaaga 47364038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 705925 - 705958
Alignment:
Q  202 cataaaaatttactattgaagattcttaaagaat 235  Q
    ||||||||||||||||| ||||||||||||||||    
T  705925 cataaaaatttactatttaagattcttaaagaat 705958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 30803333 - 30803409
Alignment:
Q  141 aaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    |||| ||||| |||||||||||||||||||||||||| | |  |||| ||||||  ||||| ||||||||||| ||||    
T  30803333 aaaattattcattcaaaaagttaaatattacaaattctactaaattg-atacacgtatttttataaaaatttattatt 30803409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 47308584 - 47308512
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaat 190  Q
    ||||||||||  |||  ||||||| ||| |||||||||||||  |||||||||||||||| ||||| |||||||    
T  47308584 cactctttaaaaatctaaaatttataaattattccttcaaaac-ttaaatattacaaatttcaatgtattgaat 47308512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 1048780 - 1048689
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||||||| || ||||||| ||||| ||||| || ||||||||||||| | ||| || |||||| |||||| || |  ||||||||||||    
T  1048780 cactctttaagcataccaaattaaaaaattattcttt-aaaaagttaaatagttcaattttcaatgcgttgaatgcataatttttcataaaaa 1048689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 4851380 - 4851289
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgca 184  Q
    |||||||||| |||||||  |||| ||||||||||| ||  ||| |||||||| |||| ||| ||||||| || |||||||| ||| ||||||    
T  4851380 gtcttgttaacgagtgcctccgggacactctttaagcatgtcaattttaaaaattatt-ctttaaaaagtcaactattacaatttcaaatgca 4851289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 18114571 - 18114535
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaag 127  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  18114571 ggtcttgttaacgagtgcccgcggggcactctttaag 18114535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 18945176 - 18945136
Alignment:
Q  178 caatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||| |||||||||||| |||||||||||||| |||||||    
T  18945176 caatgtattgaatacacaaattttcataaaaatgtactatt 18945136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 40203151 - 40203103
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttca 203  Q
    ||||||| ||||||| ||| |||||||||||||| |||||| |||||||    
T  40203151 aaaaagtcaaatatttcaatttccaatgcattgattacacatattttca 40203103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 45584505 - 45584553
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaa 136  Q
    |||||||||||||| || ||||| |||| |||||||||||||| |||||    
T  45584505 aagggtcttgttaacgaatgcccccggggcactctttaaggattccaaa 45584553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 47187932 - 47187856
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaataca 193  Q
    ||||||||||| ||||||||||||  || ||||| || ||||| | || ||||| || |||||||||||| ||||||    
T  47187932 cactctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaataca 47187856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 48022492 - 48022388
Alignment:
Q  89 agggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattga 188  Q
    ||||||||||||| ||||||||  | |  |||||||||| |||||| |||||  || ||||  || |||||||||| |||| ||| || ||||||||| |    
T  48022492 agggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattca 48022393  T
Q  189 ataca 193  Q
    |||||    
T  48022392 ataca 48022388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 38723235 - 38723336
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||||||||||||||||||||| ||||| || ||||| |||||| ||| |||||||||| || ||| ||||||||||||| ||||||||| |||    
T  38723235 cactctttaaggatcccaaatttaaaaaatattctttaaaaaaattaaatgttataaattccaatacactgattacacagattttcgtaaaaatttgcta 38723334  T
Q  217 tt 218  Q
    ||    
T  38723335 tt 38723336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 28874487 - 28874588
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    ||||| |||||||| | ||||||| |||  |||| || ||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  28874487 cactcgttaaggatactaaatttagaaaacattctttaaaaaagtaaaatgttacaaattccaatgcattgattacacagtttttcataaaaatttacta 28874586  T
Q  217 tt 218  Q
    ||    
T  28874587 tt 28874588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 40425081 - 40425211
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||||||||||||  |||||   |||| |||||||||| ||||||||||||| ||| |||| ||| |||| ||||||| |||||||||||||| |||||    
T  40425081 aagggtcttgttaacaagtgctttcggggcactctttaaagatcccaaatttagaaaatatttcttaaaaatgttaaatgttacaaattccaatacattg 40425180  T
Q  188 aatacacagattttcataaaaatttactatt 218  Q
    | |||| |  |||| ||||||| ||||||||    
T  40425181 attacaaatttttttataaaaacttactatt 40425211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 260
Target Start/End: Complemental strand, 45529259 - 45529087
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||| || |||| |||||||| |||| ||||||||||| |||||||||||| ||| ||||| |  ||||||| |||  |||||| || || |||||||    
T  45529259 aagggtattcttaacgagtgccctcggggcactctttaagcatcccaaatttagaaaatattcttcaaaaaagtcaaacgttacaagtttcagtgcattg 45529160  T
Q  188 aatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    | |||| | ||||||||||||| |||||||| | | | |||||||| |  || |||| ||||||||| |||||    
T  45529159 attacataaattttcataaaaacttactattaagggtgcttaaagagtatcccgggggcactcgttaacattt 45529087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 48811476 - 48811336
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattg 219  Q
    ||||||||||||| ||||||| ||| ||||| || |||||||  ||| ||||||||| ||||||||||| ||||||  |||||||||||| ||||||||     
T  48811476 tctttaaggatcctaaatttagaaaatattcattaaaaaagtctaatgttacaaatttcaatgcattgattacacaatttttcataaaaacttactatta 48811377  T
Q  220 aagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||  || ||||||| | ||  || ||||||||||| |||||    
T  48811376 aaagtttttaaagagtacctcggagacactcgttaacattt 48811336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 48602243 - 48602361
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcat-aaaaatttactattga 220  Q
    |||||||||| |||||||| ||| |||||||| ||||||| |||| | ||||||||||||||||| | ||||||| ||||||| ||||| || ||||| |    
T  48602243 tttaaggatcacaaatttagaaaatattccttaaaaaagtcaaatgtgacaaattccaatgcattaattacacagtttttcatgaaaaacttgctattaa 48602342  T
Q  221 agattcttaaagaatgccc 239  Q
     | |||||||||| |||||    
T  48602343 tggttcttaaagagtgccc 48602361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 265
Target Start/End: Complemental strand, 4305278 - 4305109
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaata 191  Q
    |||||||||| ||||||||  ||| |||||||||||||| | ||||||| ||  ||||  || ||||||| |||||||| |||||| |||| ||||| ||    
T  4305278 gtcttgttaacgagtgcccctggggcactctttaaggatactaaatttagaatatattttttaaaaaagtcaaatattataaattctaatgtattgatta 4305179  T
Q  192 cacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcatttatcat 265  Q
    |||   |||||||||||| |||| ||||    | |||||||| ||||| |||| ||||||||| ||||| ||||    
T  4305178 cacgatttttcataaaaacttacaattg----tccttaaagagtgccccgggggcactcgttaacatttctcat 4305109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 34591197 - 34591099
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||| |||||||||| |||||| |||||||| |||||  ||||| ||||||||| |||| ||||   |||||| ||||||||||||| ||||||||    
T  34591197 tctttaaagatcccaaatataaaaaatattccttaaaaaaagtaaatgttacaaatttcaatacattagttacacatattttcataaaaacttactatt 34591099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 38156609 - 38156514
Alignment:
Q  122 tttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||||  ||||||| ||||||||  || ||||||| |||| ||||||||| ||||||||||| |||||| ||||| |||||| |||||||||    
T  38156609 tttaaggatcttaaatttagaaagtatttttt-aaaaagtcaaatgttacaaatttcaatgcattgattacacatattttaataaaagtttactatt 38156514  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 46110994 - 46110895
Alignment:
Q  87 gaagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaag-ttaaatattacaaattccaatgcat 185  Q
    ||||||| |||||||||||||||  || |  ||||||||||||||| ||||||||||| |||||| |||||||| |||||| ||||||||| |||| |||    
T  46110994 gaagggttttgttaatgagtgcctccgcggaactctttaaggatcctaaatttaaaaaatattcc-tcaaaaagattaaatgttacaaatttcaatacat 46110896  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 48180307 - 48180212
Alignment:
Q  92 gtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||| ||||| |  |||| ||||||||||| ||||| ||||||| || ||||| || ||||||| || |||||||| |||||||||||||    
T  48180307 gtcttgttaacgagtgtctccgggacactctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgcattg 48180212  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 53038294 - 53038365
Alignment:
Q  137 tttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaa 208  Q
    |||||||| ||||| |||||||| | |||||||||||||||||||||| ||||||| |  ||||||||||||    
T  53038294 tttaaaaaatattctttcaaaaattcaaatattacaaattccaatgcactgaatacgcgaattttcataaaa 53038365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 25548271 - 25548213
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaattta 213  Q
    ||||||||||||||| ||| ||| |||||||||| |||||| |||||||||||||||||    
T  25548271 aaaaagttaaatatttcaatttctaatgcattgattacacatattttcataaaaattta 25548213  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 32071111 - 32071252
Alignment:
Q  119 ctctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||| ||||||||  |||||| ||| |||||||| ||||| | |||| ||||||||||||| || |||| |||  || |||||||||||| ||||||||    
T  32071111 ctcttgaaggatccttaatttagaaaatattccttaaaaaattcaaatgttacaaattccaaagctttgattacctagtttttcataaaaagttactatt 32071210  T
Q  219 gaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
     | | |||||||| | | ||| | || ||||||||| |||||    
T  32071211 aatggttcttaaaaagtaccccgagggcactcgttaacattt 32071252  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 43803939 - 43804107
Alignment:
Q  91 ggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaat 190  Q
    ||||||||||| ||||| || ||||| |||||||||| ||   |||||  |||  ||||| || ||||||| ||| | | ||| |||||||| ||| |||    
T  43803939 ggtcttgttaacgagtgtcctcgggt-actctttaagcatgataaattggaaagttattctttaaaaaagtcaaacaattcaatttccaatgtattaaat 43804037  T
Q  191 acacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    |||||  |||||||||||| ||||||||  ||   |||||||||| ||| |||| ||||||||| |||||    
T  43804038 acacaagttttcataaaaagttactattctaggcacttaaagaataccccgggggcactcgttaacattt 43804107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 46547853 - 46547749
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgtta 254  Q
    ||||||| ||||| | ||| ||||||||||||||||||| |  |||||||||||| |||||||  ||||  |||||||| || || ||| ||||||||||    
T  46547853 aaaaagtcaaataattcaatttccaatgcattgaatacataatttttcataaaaaattactatataagacccttaaagagtgtcc-gggaacactcgtta 46547755  T
Q  255 gcattt 260  Q
     |||||    
T  46547754 acattt 46547749  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 52638297 - 52638177
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||||||||||||  ||||| | |||| ||||||||||| |||| |||||||  || ||||  || ||||||  || |||||||| |||||||||| ||    
T  52638297 aagggtcttgttaacaagtgcac-cgggacactctttaagaatccaaaatttagtaattattattttaaaaagccaactattacaatttccaatgcagtg 52638199  T
Q  188 aatacacagattttcataaaaa 209  Q
    ||||||||  |||| |||||||    
T  52638198 aatacacaattttttataaaaa 52638177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 21813212 - 21813124
Alignment:
Q  172 aaattccaatgcattgaatacacagattttcataaaaatttactattgaagattcttaaagaatgccctggggacactcgttagcattt 260  Q
    ||||||| ||||||||||| || |  ||| ||||||||||||||||| || || |||||||| ||||||  |||||||| ||| |||||    
T  21813212 aaattccgatgcattgaatgcataattttccataaaaatttactatttaaaatccttaaagagtgcccttaggacactcattaacattt 21813124  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 19898167 - 19898116
Alignment:
Q  163 aaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    ||||||| ||| || ||||||||||| |||||| ||||||||||||||||||    
T  19898167 aaatatttcaattttcaatgcattgattacacatattttcataaaaatttac 19898116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 47930114 - 47930173
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    |||||||||||||||  || || |||| |||| |||||||| ||||||||||||||||||    
T  47930114 aaaaagttaaatattttaattttcaatacattaaatacacaaattttcataaaaatttac 47930173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 49362453 - 49362391
Alignment:
Q  129 atcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaata 191  Q
    ||||||||||||| || ||||| || |||||||||| |||||||| |||||||| ||| ||||    
T  49362453 atcccaaatttaataattattcttttaaaaagttaactattacaatttccaatgtatttaata 49362391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 13804956 - 13804883
Alignment:
Q  120 tctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaataca 193  Q
    ||||||||||| || |||| | |||  ||||||||||||||| ||||| | | | |||||||||||||||||||    
T  13804956 tctttaaggattccgaattaagaaatcattccttcaaaaagtcaaatacttcgatttccaatgcattgaataca 13804883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 53040435 - 53040556
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    |||||||||| ||| |||| | | || | |||||||||||||| | ||||| | ||| ||||  || ||||| | ||||| | ||| |||||||| ||||    
T  53040435 aagggtcttgctaacgagtactctcgtgacactctttaaggattctaaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattg 53040534  T
Q  188 aatacacagattttcataaaaa 209  Q
    |||||||| | |||||||||||    
T  53040535 aatacacaaactttcataaaaa 53040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 25753481 - 25753596
Alignment:
Q  118 actctttaaggatcccaaatttaaaaagtattccttcaa-aaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||||||||| ||  |||||||| ||| ||||| ||||| ||||| |||| ||| || || ||||||||| | |||| | ||||||||||||| ||||||    
T  25753481 actctttaagcatatcaaatttagaaaatattc-ttcaataaagtcaaatgttataagtttcaatgcattaattacataaattttcataaaaacttacta 25753579  T
Q  217 ttgaagattcttaaaga 233  Q
    || ||| | ||||||||    
T  25753580 ttaaaggtgcttaaaga 25753596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 49682180 - 49682263
Alignment:
Q  135 aatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttc-ataaaaatttactatt 218  Q
    |||| ||||| |||||||| |||||||| || ||| ||| |||| | ||||||||| |||| |||||| ||||||||||||||||    
T  49682180 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcaca-attttctataaaaatttactatt 49682263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 51039767 - 51039847
Alignment:
Q  134 aaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttac 214  Q
    ||||| ||||| |||||  | ||||||| ||||| | ||| || ||||| |||||||||| | ||||||||||||||||||    
T  51039767 aaattaaaaaattattctataaaaaagtcaaatagttcaattttcaatgaattgaatacataaattttcataaaaatttac 51039847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 5115 - 5014
Alignment:
Q  117 cactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttacta 216  Q
    |||| ||||||| | || |||| ||||| |||||||| |||||||| || ||| ||| |||| ||||||||||| || |  ||| |||||||||||||||    
T  5115 cactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttacta 5016  T
Q  217 tt 218  Q
    ||    
T  5015 tt 5014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 20332 - 20267
Alignment:
Q  144 agtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||| || |||||||||| |||||||| ||| |||||||| ||||||||  ||||||||||||    
T  20332 agtattcttttaaaaagttaactattacaatttcaaatgcattaaatacacaacttttcataaaaa 20267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 20184 - 20247
Alignment:
Q  155 aaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactatt 218  Q
    ||||||||||| ||| ||| ||| |||||||||||| |||| ||||||||||||  ||||||||    
T  20184 aaaaagttaaacatttcaatttcaaatgcattgaatgcacacattttcataaaatattactatt 20247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 1072 - 951
Alignment:
Q  88 aagggtcttgttaatgagtgcccgcgggtcactctttaaggatcccaaatttaaaaagtattccttcaaaaagttaaatattacaaattccaatgcattg 187  Q
    ||||||||| |||| |||||  | |||  |||||| || |||||| |||||||  || | ||| || ||||||| || |||||||| || ||||| ||||    
T  1072 aagggtcttattaacgagtgtactcggaacactctgtatggatcctaaatttagcaattgttcttttaaaaagtcaactattacaattttcaatgtattg 973  T
Q  188 aatacacagattttcataaaaa 209  Q
    ||||||||  ||||||||||||    
T  972 aatacacatcttttcataaaaa 951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 1788 - 1723
Alignment:
Q  144 agtattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaa 209  Q
    ||||||| || ||||||  || |||||||| |||||||||||||||| ||||  ||||||||||||    
T  1788 agtattcttttaaaaagccaactattacaatttccaatgcattgaatgcacaacttttcataaaaa 1723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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