View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_196 (Length: 277)
Name: NF11324A_low_196
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_196 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 5690143 - 5689881
Alignment:
| Q |
7 |
ctgaaaagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgagga |
106 |
Q |
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| T |
5690143 |
ctgaaaagaaaggtgatagatatgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgagga |
5690044 |
T |
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| Q |
107 |
cacttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccatccaagattttctataca |
206 |
Q |
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| T |
5690043 |
cacttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctataca |
5689944 |
T |
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| Q |
207 |
tgttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagccttct |
269 |
Q |
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| T |
5689943 |
ttttatttgagaggtattaaggatttgccacaagagcttcttggtaaacatgttgagccttct |
5689881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 25914822 - 25914568
Alignment:
| Q |
9 |
gaaaagaaaggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggaca |
108 |
Q |
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| T |
25914822 |
gaaaagtatggtgacagatatgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggaca |
25914726 |
T |
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| Q |
109 |
cttatctagctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccatccaagattttctatacatg |
208 |
Q |
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| T |
25914725 |
catatctaactgtgactggtggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacatt |
25914626 |
T |
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| Q |
209 |
ttatttgagaggtattaaggatttgccacaagagcttcttggtaagcatgttgagcct |
266 |
Q |
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| T |
25914625 |
ttatttgaagggtattaaggatttgccacaagagcttcttggtaaaccagttgagcct |
25914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 6792563 - 6792803
Alignment:
| Q |
26 |
atatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgact |
125 |
Q |
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| T |
6792563 |
atatgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgact |
6792662 |
T |
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| Q |
126 |
ggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccatccaagattttctatacatgttatttgagaggtatta |
225 |
Q |
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| T |
6792663 |
ggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtatta |
6792762 |
T |
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| Q |
226 |
aggatttgccacaagagcttcttggtaagcatgttgagcct |
266 |
Q |
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| T |
6792763 |
aggatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
123 |
actggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccatccaagattttctatacatgttatttgagaggta |
222 |
Q |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
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| Q |
223 |
ttaaggatttgccaca |
238 |
Q |
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| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 22227359 - 22227490
Alignment:
| Q |
18 |
ggtgatagatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctag |
117 |
Q |
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| T |
22227359 |
ggtgatagatatgaagcaatttacagcttctactttggagactatggtcatatatcagtacaaggaccttatctcacatacc---aagacacatatcttg |
22227455 |
T |
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| Q |
118 |
ctgtgactggtggttctggaatatttgaaggtgtt |
152 |
Q |
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| T |
22227456 |
ctataacaggtggttctggaatctttgaaggtgtt |
22227490 |
T |
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