View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_2 (Length: 614)
Name: NF11324A_low_2
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_2 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 22782684 - 22782370
Alignment:
| Q |
14 |
agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22782684 |
agagcagtgacaaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg |
22782585 |
T |
|
| Q |
114 |
ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22782584 |
ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag |
22782485 |
T |
|
| Q |
214 |
gataaaggaacaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaagtgatggagattatgtggttttctccttttaat |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22782484 |
gataaaggaacaagtaatagagaaataaaaaataaaagaaaatggacagtttgagaaaatgaggaaagggatggagattatgtggttttctccttttaat |
22782385 |
T |
|
| Q |
314 |
aatgcatattttctg |
328 |
Q |
| |
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||||||||||||||| |
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| T |
22782384 |
aatgcatattttctg |
22782370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 336 - 614
Target Start/End: Complemental strand, 22782340 - 22782058
Alignment:
| Q |
336 |
atatttggtatgtcttgattttccccataaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaagcatatgtgttagttaca |
435 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22782340 |
atatttggtatgtcttgatttcccccctaaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaaacatatgtgttagttaca |
22782241 |
T |
|
| Q |
436 |
atgcatgaaaaagtatt----taccatgtaactattgcgtactaggcaaacgacgtgatctgcaatgcttaatcattcatttgactagtttcgcaagtag |
531 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||| |||||||||||| |||||| |||||||||| ||||||| |
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| T |
22782240 |
atgcatgaaaaagtattgacgtacggtgtaactattgcgtactagctaaacgacatgatctacaatgcttaatccttcattcgactagtttcacaagtag |
22782141 |
T |
|
| Q |
532 |
tccatgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaa |
614 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22782140 |
tgcatgataactcccatcctagtgagattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatctattgacaa |
22782058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 22778553 - 22778317
Alignment:
| Q |
21 |
tgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaaca |
120 |
Q |
| |
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|||||||| ||||||| ||||||| |||| ||||||||||||| || |||| |||||| |||||||||||||| ||| |||||||||||||||||||| | |
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| T |
22778553 |
tgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaa |
22778454 |
T |
|
| Q |
121 |
tcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaag |
220 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||||| |
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| T |
22778453 |
ccccaagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaag |
22778354 |
T |
|
| Q |
221 |
gaacaagtaatagagaaataaaaaatcaaagaaaatg |
257 |
Q |
| |
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||||| ||||||| || |||| || |||||||||||| |
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| T |
22778353 |
gaacatgtaatagtgacataacaactcaaagaaaatg |
22778317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 22775181 - 22774961
Alignment:
| Q |
14 |
agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg |
113 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
22775181 |
agagcaatgacaaataaaaacaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatgttgaagtggagccctttgatcatatgatagatg |
22775082 |
T |
|
| Q |
114 |
ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag |
213 |
Q |
| |
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||||| | || ||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22775081 |
ctcaaaaccctaagatgtaccagaaagtgttgtatggagattatttgaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggcaaa |
22774982 |
T |
|
| Q |
214 |
gataaaggaacaagtaataga |
234 |
Q |
| |
|
|||||||| | |||||||||| |
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| T |
22774981 |
gataaaggcataagtaataga |
22774961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 22765361 - 22765140
Alignment:
| Q |
14 |
agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg |
113 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
22765361 |
agagcagtaacaaataagaacaaaagaaggacttcccatgcatcatttttgatccctcgagatgatgttgaaattgagccatttgatcatatgatagatg |
22765262 |
T |
|
| Q |
114 |
ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag |
213 |
Q |
| |
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|| || | |||| || ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| | |||||| || | |
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| T |
22765261 |
ctgaaaacaccaaaatttaccagaaagtcaagtttggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacatattgatgtggccaa |
22765162 |
T |
|
| Q |
214 |
gataaaggaacaagtaatagag |
235 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
22765161 |
gataaaggaacagttaatagag |
22765140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 23 - 281
Target Start/End: Original strand, 16085070 - 16085328
Alignment:
| Q |
23 |
acaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatc |
122 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||| ||||| |||| |||| ||| ||||||||||||||||| ||| | ||||||||| ||||| || | | |
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|
| T |
16085070 |
acaaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgagaagatgttgaagttgagccctttgaccatatgataaatgctgaaaacc |
16085169 |
T |
|
| Q |
123 |
ccaagatgtaccagaaagtcaagtttggagattatttgaggcattcc-ttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaagg |
221 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||||||| | ||| ||||| |||| | ||||||||||||| |||||||| | ||||||| ||||| |
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|
| T |
16085170 |
ccaaaatgtaccagaaagtcaggtatggagattatttgagggaatcctttgaaaagaatataggagggaaaaacaaacactgatatggcaaggagaaagg |
16085269 |
T |
|
| Q |
222 |
aacaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaag |
281 |
Q |
| |
|
|| | |||||||| ||||| |||| ||||||| | |||||||||||| | |||||||| |
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|
| T |
16085270 |
aatatgtaatagaagaataacaaatttaagaaaa-gaccagtttgagaatacgaggaaag |
16085328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 23278384 - 23278573
Alignment:
| Q |
9 |
agcatagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgat |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||| || | ||||||| |||| ||| ||| ||| |||||||||| |
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| T |
23278384 |
agcatagagctatgacaaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgctgaacttgggccctttgatcatatgat |
23278483 |
T |
|
| Q |
109 |
agatgctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacaca |
198 |
Q |
| |
|
||||| |||| |||||||||||||| || || ||| | |||||| ||||||||||| ||||||| || ||| |||| ||||||||||| |
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| T |
23278484 |
agatgatcaaaatcccaagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaattggaaggaaaaacaca |
23278573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 22770385 - 22770263
Alignment:
| Q |
11 |
catagagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatag |
110 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||||| || | ||||| |||||| ||||| | ||||| |||| | | | |||| |||||||||||| |
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| T |
22770385 |
catagagcaatcacaaataagaacaagaaaaggactacttttatatcatatttgttccctcagggtgatgctgaaatcggggcattagatcatatgatag |
22770286 |
T |
|
| Q |
111 |
atgctcaacatcccaagatgtac |
133 |
Q |
| |
|
||| |||| |||||||||||||| |
|
|
| T |
22770285 |
atgatcaaaatcccaagatgtac |
22770263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 9028 - 9089
Alignment:
| Q |
534 |
catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct |
595 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||| |
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|
| T |
9028 |
catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct |
9089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 14318 - 14379
Alignment:
| Q |
534 |
catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct |
595 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||| |
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|
| T |
14318 |
catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct |
14379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 613
Target Start/End: Original strand, 8821847 - 8821922
Alignment:
| Q |
538 |
ataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgaca |
613 |
Q |
| |
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||||||||||| ||||||||| ||||||||| | ||| |||||| | ||||||||| ||||||||| ||||||| |
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| T |
8821847 |
ataactcccatggtagtgggatcgtggcgccccacattcggcttcagtttcctctcctagacatgatctattgaca |
8821922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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