View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_201 (Length: 272)

Name: NF11324A_low_201
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_201
NF11324A_low_201
[»] chr3 (3 HSPs)
chr3 (24-262)||(31506658-31506896)
chr3 (24-262)||(34495863-34496101)
chr3 (24-262)||(27607410-27607648)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 262
Target Start/End: Original strand, 31506658 - 31506896
Alignment:
Q  24 gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31506658 gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg 31506757  T
Q  124 cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31506758 cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga 31506857  T
Q  224 cttggctgagtctgccttcgttcataaataagatctctg 262  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  31506858 cttggctgagtctgctttcattcataaataagatctctg 31506896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 34496101 - 34495863
Alignment:
Q  24 gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  34496101 gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattg 34496002  T
Q  124 cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga 223  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34496001 cttaccttcaagctggtgctggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga 34495902  T
Q  224 cttggctgagtctgccttcgttcataaataagatctctg 262  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  34495901 cttggctgagtctgctttcgttcataaataagatctctg 34495863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 27607648 - 27607410
Alignment:
Q  24 gacattgctctagctctaaggacaatagtatttccaactgggactaggtacgacacaatgtactcgtataaagacctaaacaaacgccaagagtggattg 123  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  27607648 gacatagctctagctctaaggacaatagtatttccaactgggactaggtacgatacaatgtactcgtataaagacctaaacaaacgacaagagtggattg 27607549  T
Q  124 cttaccttcaagctggtgccggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga 223  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27607548 cttaccttcaagctggtgcaggtattgttgccgacagtgaccctgccgatgagcaccaagaatgtcaaaacaaagctgctggtcttgctcgctccatcga 27607449  T
Q  224 cttggctgagtctgccttcgttcataaataagatctctg 262  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  27607448 cttggctgagtctgctttcgttcataaataagatctctg 27607410  T

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