View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_21 (Length: 444)
Name: NF11324A_low_21
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 6465957 - 6466061
Alignment:
| Q |
102 |
aaatagttctgttgtcacattaaaaaccaaataacaaacccaaaaaatagttaacatcaaaa-gtctagaattatgaaccttacaatcaaaaagggtcca |
200 |
Q |
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| T |
6465957 |
aaataggtctgttgtcacaataaaaaccaaataacaaccccaaaa--tagctaacatcaaaaagtctagaattatgaaccttacaatcaaaaagggtcca |
6466054 |
T |
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| Q |
201 |
taatcaa |
207 |
Q |
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| T |
6466055 |
taatcaa |
6466061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 6466181 - 6466231
Alignment:
| Q |
379 |
ctgctatactgctccacactgttatccagcaaatctccactgtcttttcat |
429 |
Q |
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| T |
6466181 |
ctgctgtattgctccacactgttatccagcaaacctccactgtcttttcat |
6466231 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 43580420 - 43580329
Alignment:
| Q |
98 |
ttataaatagttctgttgtcacattaaaaaccaaataacaaacc-ca--aaaaatagttaacatcaaaagtctagaattatgaaccttacaa |
186 |
Q |
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| T |
43580420 |
ttataaataggtctgctgccacattataaaccaaataacaacccgcagtaataatagttaacataaaaagtttagaattatgaaccttacaa |
43580329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 28252312 - 28252255
Alignment:
| Q |
33 |
aaatatgacaaatcattcgtgaactcatcacgattta-ccactcgctataactagcat |
89 |
Q |
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| T |
28252312 |
aaatatgccaaatcagtcgtgaacccatcacgattaagccactcactataactagcat |
28252255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 34347330 - 34347266
Alignment:
| Q |
28 |
gacacaaatatgacaaatcattcgtgaactcatcacgattta-ccactcgctataactagcattt |
91 |
Q |
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| T |
34347330 |
gacataaatatgccaaatcattcgtgaatccatcacgatttagccactcgctataactagcattt |
34347266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 33427140 - 33427204
Alignment:
| Q |
28 |
gacacaaatatgacaaatcattcgtgaactcatcacgattta-ccactcgctataactagcattt |
91 |
Q |
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| T |
33427140 |
gacacaaatatgacaaatcgttcgtaaacccatcacgatttagcctctcgctgtaactagcattt |
33427204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 13958553 - 13958612
Alignment:
| Q |
34 |
aatatgacaaatcattcgtgaactcatcacgattta-ccactcgctataactagcatttt |
92 |
Q |
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| T |
13958553 |
aatatgccaaattatttatgaacccatcacgatttagccactcgctataactagcatttt |
13958612 |
T |
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