View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_212 (Length: 266)
Name: NF11324A_low_212
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_212 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 44256102 - 44255852
Alignment:
| Q |
1 |
taaaagtttatgaacatgtttttacacaacatttggtaaataggttagatgttgtattcggtgtttggtacattgaagttaaaaagggtggatgctggga |
100 |
Q |
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| T |
44256102 |
taaaagtttatgaccatgtttttaaacaacatttggtaaataggttagatgttgtattcggtgtttggtacattgaagttaaaaagggtggatgctggga |
44256003 |
T |
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| Q |
101 |
catggtctagcttaataaaagttgtacacaatgagcttgtgtattatccatgctgtctaaactcttaaaccattcttgcatatgttggatttgaaatcat |
200 |
Q |
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| T |
44256002 |
catggtctagcttaataatagttgtacacaatgagcttgtgtattatccatgctgtctaaactcttaaactattcttgcatatgttggatttgaaatcat |
44255903 |
T |
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| Q |
201 |
ttaattgctttgaccctacaaatttgtcactacatgataaatgcttgtaat |
251 |
Q |
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| T |
44255902 |
ttagttgctttgaccctacaaatttgtcactacatgataaatgcttgtaat |
44255852 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 20471967 - 20471900
Alignment:
| Q |
183 |
tgttggatttgaaatcatttaattgctttgaccctacaaatttgtcactacatgataaatgcttgtaat |
251 |
Q |
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| T |
20471967 |
tgttggatatgaaatcatttagttgcttcgacccaacaactttg-cactgcctgataaatgtttgtaat |
20471900 |
T |
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