View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_224 (Length: 262)
Name: NF11324A_low_224
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_224 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 40821845 - 40821609
Alignment:
| Q |
12 |
gaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgatt |
111 |
Q |
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| T |
40821845 |
gaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgtgatt |
40821746 |
T |
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| Q |
112 |
ttttagactcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtt |
211 |
Q |
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| T |
40821745 |
ttttagactcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtt |
40821646 |
T |
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| Q |
212 |
tcagtcgttgttcaaatatgctctccgttctgttcat |
248 |
Q |
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| T |
40821645 |
tcagtcgttgttcaaatatgctctctgttctgttcat |
40821609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 248
Target Start/End: Original strand, 20292021 - 20292219
Alignment:
| Q |
40 |
agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa |
136 |
Q |
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| T |
20292021 |
agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa |
20292116 |
T |
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| Q |
137 |
tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc |
236 |
Q |
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| T |
20292117 |
tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgg--gtttca------gttcaaatatgctctc |
20292207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
152 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
227 |
Q |
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| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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