View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_225 (Length: 262)
Name: NF11324A_low_225
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_225 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 45643011 - 45643255
Alignment:
| Q |
7 |
atggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgt |
106 |
Q |
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| T |
45643011 |
atggtgttgcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgt |
45643110 |
T |
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| Q |
107 |
tcccgcttctttgaggggaatggttgtggcaccactgctgtcagtactaattgaattcccagttgtgcatgattgatagtcactttccctaacttcatcc |
206 |
Q |
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| T |
45643111 |
tcccgcttctttgaggggaatggttgtggcaccgctactgtctgtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatcc |
45643210 |
T |
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| Q |
207 |
actgtgtgccacccagcttcatagttgaacactgtcaataataaagtta |
255 |
Q |
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| T |
45643211 |
actgtgtg---cccagctacatagttgaacactgtc-ataataaagtta |
45643255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 41 - 255
Target Start/End: Complemental strand, 45703282 - 45703063
Alignment:
| Q |
41 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
137 |
Q |
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| T |
45703282 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45703183 |
T |
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| Q |
138 |
ccactgctgtcagtactaattgaattcccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
237 |
Q |
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| T |
45703182 |
ccactaccgtctgtactaattgaatttctagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
45703083 |
T |
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| Q |
238 |
ctgtc--aataataaagtta |
255 |
Q |
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| T |
45703082 |
ctgtcataataataaagtta |
45703063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 45650283 - 45650508
Alignment:
| Q |
15 |
gcagaaggagcagcagaagaaggcttaaccttaacaaagagtttcatgccaaatgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgctt |
114 |
Q |
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||||||| |||| |||||||| |||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
45650283 |
gcagaagaagcactagaagaagccttaactttaacagaaagtttcatgccacctgtgcaatgtccaggaacagcacatatgaagtaatgtgttcctgctt |
45650382 |
T |
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| Q |
115 |
ctttgaggggaatggttgtggcaccactgctgtcagtactaattgaattcccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtg |
214 |
Q |
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| T |
45650383 |
tcttgaggggaatggttgtgggaccactgctgtcagtactaattgaatttccagttgtgcatgatttatagtcactttctttaacttcatccactgtgtg |
45650482 |
T |
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| Q |
215 |
ccacccagcttcatagttgaacactgtca |
243 |
Q |
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||||||| |||||||||| ||||||| |
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| T |
45650483 |
---cccagctccatagttgaatactgtca |
45650508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 45887094 - 45886889
Alignment:
| Q |
41 |
aaccttaacaaagagtttcatgccaaa---tgtgcaatgtccaggaatagcacatatgaagtaatgtgttcccgcttctttgaggggaatggttgtggca |
137 |
Q |
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|||||||||| |||||||||||||| | |||||||| |||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
45887094 |
aaccttaacagagagtttcatgccaccacttatgcaatgtacaggaacagcacatatgaagtaatgagttcctgcttttttgaggggaatggttgtggca |
45886995 |
T |
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| Q |
138 |
ccactgctgtcagtactaattgaattcccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaaca |
237 |
Q |
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| T |
45886994 |
ccactaccgtctgtactaattgaatttctagttgtgcatgaattatagtcactttcattaacttcatccactgtgtgccacccagcttcatagttgaaca |
45886895 |
T |
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| Q |
238 |
ctgtca |
243 |
Q |
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|||||| |
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| T |
45886894 |
ctgtca |
45886889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 30054756 - 30054843
Alignment:
| Q |
129 |
gttgtggcaccactgctgtcagtactaattgaattcccagttgtgcatgattgatagtcactttccctaacttcatccactgtgtgcc |
216 |
Q |
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| T |
30054756 |
gttgtggcaccgctactgtctgtactaattgaatttctggttatgcatgatttatagtcactttctttaacttaatccactgtgtgcc |
30054843 |
T |
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