View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_226 (Length: 261)
Name: NF11324A_low_226
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_226 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 16086066 - 16085823
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||| ||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
16086066 |
cctatatgagtgtcaagtgaggccgcttgtatgagactgtggcgggtctttagagcactcatgaatatcaggcatgcgcatggcctaaatagcgcacaac |
16085967 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085966 |
ggcgtaacagcatgaattgtgtgggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
16085867 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16085866 |
tgttaagtcttattagtctaggacaggttccatagcttgctata |
16085823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 26052623 - 26052861
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||| ||||| |||||||| ||||||||| ||||| || |
|
|
| T |
26052623 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaaaaccagacacgcgcacggcctaaat-gcgcaacac |
26052721 |
T |
|
| Q |
104 |
ggcg-taacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
||| | ||| | ||||||||||||| ||||||| ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
26052722 |
agcgattacacga-gaattgtgggggt--aatgtgattgtgagacctctagcatacatcaagtgtattgggttccatagcttgctaaaccaattcactgt |
26052818 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||||||||| |
|
|
| T |
26052819 |
gtgttaagcctcattagtctaggacgggttccatagcttgcta |
26052861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 26708021 - 26707966
Alignment:
| Q |
75 |
gcacgcgcatggcctaaatagcgcacaacggcgtaacaacatgaattgtgggggtgt |
131 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
26708021 |
gcacacgcatggcctat-tagcgcacaaccgcgtagcaacaagaattgtgggggtgt |
26707966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 26977755 - 26977700
Alignment:
| Q |
75 |
gcacgcgcatggcctaaatagcgcacaacggcgtaacaacatgaattgtgggggtgt |
131 |
Q |
| |
|
|||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
26977755 |
gcacacgcatggcctat-tagcgcacaaccgcgtagcaacaagaattgtgggggtgt |
26977700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 53727606 - 53727364
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53727606 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaataccaggcacgcgcatggcctat-tagcgcacaac |
53727508 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
||||||| | | ||||| |||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
53727507 |
ggcgtaatagctagaattctgggggtgtaatgtgattgtgagacctctaacacataacaagtgtcttggattccatagcttgctaaaccaattcactgtg |
53727408 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53727407 |
tgttaagtcttattagtctaggacaggttccatagcttgctata |
53727364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 19930990 - 19930750
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||| || |||| || | |||| |||||| |||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
19930990 |
cctatataagtgtcaagtggggcagcttgcatgaaaccgtggtgggtttctagagcactcatgaataccaggcacgcgtacggcctat-tagcgcacaac |
19930892 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| |||||||||||| |||| | ||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
19930891 |
tgtgtaacaacaagaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgagttccatagcttgctaaaccaattcactgtg |
19930792 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|| ||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
19930791 |
tgctaagtctcattagtctaggacagattccatagcttgcta |
19930750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 14657339 - 14657578
Alignment:
| Q |
5 |
ctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaacg |
104 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||| ||||||| ||||| |||||| |||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
14657339 |
ctatatgagtgtgaagtgaggccgcttgcatgagaccgtggcgggcctctagagcactcatgaataccaggcacgcgcacggtctat-tagcgcacaacc |
14657437 |
T |
|
| Q |
105 |
gcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgt |
204 |
Q |
| |
|
|| ||| | | |||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
14657438 |
gcataatagctagaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgggtttcatagcttcccaaaccaattcactatgt |
14657537 |
T |
|
| Q |
205 |
gttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
||||||||| |||||||| |||| ||||| ||||||||||| |
|
|
| T |
14657538 |
gttaagtctcattagtctaggacgggttcgatagcttgcta |
14657578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 32895391 - 32895628
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||| ||||| |||||||| ||||||||| ||||| || |
|
|
| T |
32895391 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaaaaccagacacgcgcacggcctaaat-gcgcaacac |
32895489 |
T |
|
| Q |
104 |
ggcg-taacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
||| | ||| | ||||||||||||| ||||||| | ||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32895490 |
agcgattacacga-gaattgtgggggt--aatgtgatt-tgagacctctagcatacaccaagtgtattgggttccatagcttgctaaaccaattcactat |
32895585 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
32895586 |
gtgttaagtcttattagtctaggacgggttccatagcttgcta |
32895628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 16357244 - 16357047
Alignment:
| Q |
49 |
atctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaacggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacc |
148 |
Q |
| |
|
||||||| |||| | |||||||| |||| ||| || |||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
16357244 |
atctctagagcagtcatgaatactaggcccgcacacggcctat-tagcgcacaaccgcgtaacaacaagaattgtgagggtgtaatgtgattgtgagacc |
16357146 |
T |
|
| Q |
149 |
tctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgtgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
|||| |||| | |||||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| |||| ||||||||||||||||||| |
|
|
| T |
16357145 |
tctagcatacaccaagtgtcttgggttccatagcttgctaaaccaattcagtgtgtgttaagcctcattagtctaggacgggttccatagcttgctata |
16357047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 42254510 - 42254294
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| ||| ||| | |||| |||| | ||||||||||| |||||||| |||||| ||||| ||||| |
|
|
| T |
42254510 |
cctatatgagtgtcaactggggccgcttgcatgagaccgtgacgggt-tctagagcattcatgaataccagacacgcgcacggcctat-tagcgtacaac |
42254413 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
| ||||| || |||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42254412 |
cacataacatcaagaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgggttccatagcttgctaaaccaattcactccg |
42254313 |
T |
|
| Q |
204 |
tgttaagtcttattagtct |
222 |
Q |
| |
|
|| ||||||| |||||||| |
|
|
| T |
42254312 |
tgctaagtctcattagtct |
42254294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 11635006 - 11634810
Alignment:
| Q |
49 |
atctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaacggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacc |
148 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||| |||| || |||||||| | ||||||||| ||||| ||||||||||| ||| |||||| || |
|
|
| T |
11635006 |
atctctagagcactcatgaatatcaggcacgcgcatgacctat-taacgcacaactgtgtaacaacaagaattaggggggtgtaatatgattgtgaggcc |
11634908 |
T |
|
| Q |
149 |
tctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgtgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
11634907 |
tctaacatgcaacaattgtct-gggttccatagcttgctaaaccaattcaccgtgtcttaagtcttattagtctaggacgggttccatagcttgatata |
11634810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 16363804 - 16363774
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgta |
34 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16363804 |
cctatatgagtgtcaagtggggccgcttgta |
16363774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 6668674 - 6668434
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
6668674 |
cctatatgagtgtcaagtggggccgcttgtatgagaccgtggcaggtctctagagcactcatgaataccaggcacgcgcaaggcctat-tagcggacaac |
6668576 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6668575 |
cgcgtaacagcaagaattgtgggggtgtaatgtgactgtgagacctctagcatacaccaagtgtcttgggttccatagcttgctaaaccaattcactgtg |
6668476 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
||||||| || |||||||| |||| | ||||||||||||||| |
|
|
| T |
6668475 |
tgttaagcctcattagtctaggacggattccatagcttgcta |
6668434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 43291300 - 43291540
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
43291300 |
cctatatgagtgtcaagtggggccgcttgtatgagaccgtggcgggtctctagagcactcatgaataccaggcacgcgcacggcctat-tagggcacaac |
43291398 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43291399 |
cgcgtaacaacaagaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgggttccatagcttgctaaaccaattcactgtg |
43291498 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||||| |||||| | |||| |||| |||||||||||| |
|
|
| T |
43291499 |
tgttaagtctcattagtgtaggacgggtttcatagcttgcta |
43291540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 8989850 - 8989688
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||| ||||| |||||||||||||||||| ||||| || |
|
|
| T |
8989850 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaaaaccagacacgcgcatggcctaaat-gcgcaacac |
8989752 |
T |
|
| Q |
104 |
ggcg-taacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgt |
167 |
Q |
| |
|
|| | || || |||||||||||||||||||||| | ||||||||||| |||| | ||||||| |
|
|
| T |
8989751 |
aacgatgac-acgagaattgtgggggtgtaatgtgattatgagacctctagcatacatcaagtgt |
8989688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 6806031 - 6806120
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaat |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||| |||| || |||||| |||||| ||||| ||||| |||||||| || |||||| |
|
|
| T |
6806031 |
cctatatgagtgtcaagtgggaccgcttgcatgggaccgtggtgggtctctagagcactcatgaaaaccagacacgcgcacggtctaaat |
6806120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 6661163 - 6661128
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgaga |
39 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6661163 |
cctatgtgagtgtcaagtggggccgcttgtatgaga |
6661128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 6685442 - 6685477
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgaga |
39 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6685442 |
cctatgtgagtgtcaagtggggccgcttgtatgaga |
6685477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 572554 - 572521
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatga |
37 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
572554 |
cctatgtgagtgtcaagtggggccgcttgtatga |
572521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 32353229 - 32352989
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||| || ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
32353229 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctggagcactcataaataccaggcacgcgcacggcctat-tagcgcacaac |
32353131 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32353130 |
cgcgtaacaacaagaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgggttccatagcttgctaaaccaattcactgtg |
32353031 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
32353030 |
tgttaagtctcattagtctaggacgggtttcatagcttgcta |
32352989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 39427050 - 39426808
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
39427050 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaataccaggcacgcgcacggcctat-taccgcacaac |
39426952 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
| |||||| || ||||||||||||||||| |||| |||| ||| ||||||||| | |||||||||||||||||||||||||||||||||| ||| | || |
|
|
| T |
39426951 |
cgtgtaacagcaagaattgtgggggtgtaacgtgattgtgggacttctaacatacaacaagtgtcttgggttccatagcttgctaaaccaactcattgtg |
39426852 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||||||||||||| ||| | || ||||||||||||||||||| |
|
|
| T |
39426851 |
tgttaagtcttattaatctagaacgggttccatagcttgctata |
39426808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 31207462 - 31207222
Alignment:
| Q |
6 |
tatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaacgg |
105 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||||||| |||||| |||||| ||||||||||| |||||||| |||||| ||||| ||||| | |
|
|
| T |
31207462 |
tatatgagtgtcaattggggccgcttgcatgagacagtggcgggtctctagagcactcatgaataccagccacgcgcacggcctat-tagcgaacaaccg |
31207364 |
T |
|
| Q |
106 |
cgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgtg |
205 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31207363 |
cgtaacagcaagaattgtgggggtgtaatgtgactgcgagacctctagtatacaccaagtgtcttgggttccatagcttgctaaaccaattcactgcgtg |
31207264 |
T |
|
| Q |
206 |
ttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||| || |||||||| |||| ||||||||||||| ||||| |
|
|
| T |
31207263 |
ttaagcctcattagtctaggacgggttccatagctttctata |
31207222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 32354586 - 32354826
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||| ||||| || | ||| ||||||||| ||||| || |
|
|
| T |
32354586 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaaaaccagacatgtgcacggcctaaat-gcgcaacac |
32354684 |
T |
|
| Q |
104 |
ggcg-taacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
|| | ||| | ||||||||||||||| ||||| | ||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
32354685 |
aacgatgacacgaa-aattgtgggggtgtattgtgattatgagacctctagcatacatcaagtgtattgggttccatagcttgctaaaccaattcactgt |
32354783 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
32354784 |
gtgttaagtctcattagtctaggacgggttccatagcttgcta |
32354826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 26969786 - 26969540
Alignment:
| Q |
5 |
ctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaacg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||| | ||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
26969786 |
ctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcattcatgaataccagacacgcgcatggcctat-tagcgcacaacg |
26969688 |
T |
|
| Q |
105 |
gcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgt |
204 |
Q |
| |
|
|||||||| | || ||| ||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26969687 |
gcgtaacagctagatttgcgggggtgtaatgtcattgtgagacctctaacacataacaagtgtcttgggttccatagcttgctaaaccaattcactgtgt |
26969588 |
T |
|
| Q |
205 |
gttaagtcttattagtctgggacaggttccatagcttgctatattatt |
252 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
26969587 |
gttaagtcttattagtctaagacaggtttaatagcttgctatactatt |
26969540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 10938869 - 10938632
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
10938869 |
cctatatgagtttcaagtggggccgcttgtatgagaccgtggcgggtctctagagcactcatgaataccaggcacgcgcatggcctat-tcgtgcacaac |
10938771 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||| ||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
10938770 |
cgcgtaacagcaagaattgtgggggtgtagtgtgattgtgagatctctagcacataacaagtgtcttgggttccatagcttgctaaaccaattcattgta |
10938671 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttg |
242 |
Q |
| |
|
|| ||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
10938670 |
tgctaagtctcattagtctaggacgggttccatagcttg |
10938632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 10944731 - 10944494
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
10944731 |
cctatatgagtttcaagtggggccgcttgtatgagaccgtggcgggtctctagagcactcatgaataccaggcacgcgcatggcctat-tcgtgcacaac |
10944633 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||| ||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
10944632 |
cgcgtaacagcaagaattgtgggggtgtagtgtgattgtgagatctctagcacataacaagtgtcttgggttccatagcttgctaaaccaattcattgta |
10944533 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttg |
242 |
Q |
| |
|
|| ||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
10944532 |
tgctaagtctcattagtctaggacgggttccatagcttg |
10944494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 14632072 - 14631951
Alignment:
| Q |
124 |
gggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgtgttaagtcttattagtctg |
223 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||| | ||||||| ||||||| | |||||||||||||||||||| || ||||||| | |||||||| |
|
|
| T |
14632072 |
gggggtgtaatttgattatgagacctctagcatacatcaagtgtattgggtttcttagcttgctaaaccaattcaacgtgcgttaagtttcattagtcta |
14631973 |
T |
|
| Q |
224 |
ggacaggttccatagcttgcta |
245 |
Q |
| |
|
||| | ||||||||||||||| |
|
|
| T |
14631972 |
agacggattccatagcttgcta |
14631951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 14632185 - 14632133
Alignment:
| Q |
10 |
tgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcact |
62 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||| || |||||| |
|
|
| T |
14632185 |
tgagtgtcaagtggggccgcttgcatgagactgtgacgggtctataaagcact |
14632133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 6950568 - 6950326
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||||||||||| | |||||| ||||||||||||||| |||| | |||| ||||||||||| |
|
|
| T |
6950568 |
cctatatgagtgtcaagtggggctgcttgcatgagaccgtggcggatctccagagcactcatgaataccaggcacacgcacgacctat-tagcgcacaac |
6950470 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||| || |
|
|
| T |
6950469 |
cgcgtaacagcaagaattgtgggagtgtaatgtgattgtgagacctctaacatacaacaagtgtcttgggttccatagcttgctaaatcaactcactgtg |
6950370 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
6950369 |
tgttaagtcttattagtctatgacgggttccatagcttgctata |
6950326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 24042397 - 24042156
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| | |||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
24042397 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcacgaataccaggcacgcgcacagcct-attagcgcacaac |
24042299 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtctt-gggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| |||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
24042298 |
cgcgtaacagcaagaattatgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttggggttccatagcttgctaaaccaattcactgt |
24042199 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
||||||| ||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
24042198 |
gtgttaactctcattagtctaggatgggttccatagcttgcta |
24042156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 34234758 - 34235001
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcgga-tctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaa |
102 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| | || | |||||| |||||| ||||||| ||||||| ||||||||||| |||||||| | |
|
|
| T |
34234758 |
cctatatgagagtcaagtggggccgcttgcatgagatcttagcaaaatctctagagcactcatgaatatcaggcacacgcatggcctat-tagcgcacca |
34234856 |
T |
|
| Q |
103 |
cggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
34234857 |
ccgcgtaacagcaagaattgtgggggtgtaatgtgattgtgagacctctaacatacaacaagtgtcttgggttccataacttgctaaaccgattcactgt |
34234956 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||||||| ||| |||||| |||| ||||||||| ||||||||| |
|
|
| T |
34234957 |
gtgttaagttttactagtctaggacgggttccataacttgctata |
34235001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 27077526 - 27077764
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||| | ||| |||||||| ||||||||| ||||| || |
|
|
| T |
27077526 |
cctatataagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaaaatcagacacgcgcacggcctaaat-gcgcaacac |
27077624 |
T |
|
| Q |
104 |
ggcg-taacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
||| | ||| | ||||||||||||| |||| || ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
27077625 |
agcgattacacga-gaattgtgggggt--aatgcgattgtgagacctctagcatacatcaagtgtattgggttccatagcttgctaaaccaattcactgt |
27077721 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||||||||| |
|
|
| T |
27077722 |
gtgttaagcctcattagtctaggacgggttccatagcttgcta |
27077764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 19975458 - 19975662
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||| ||| ||| ||| || |||||| ||||||||||| |||| ||| ||||| | ||||||||||| |
|
|
| T |
19975458 |
cctatatgagtgtcaagtgcgaccgcttgcatgagaccgtgacgggtctgtagagcactcatgaataccagacacgtgcacggcct-attagcgcacaac |
19975556 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
||||||| || ||||||||||||||| ||||| |||||||||||| |||| | | ||||||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
19975557 |
cacgtaacagcaagaattgtgggggtgtgatgtgcttgtgagacctcttgcatacaac-agtgtcttggggtccatagtttgctaaaccaattcaccgtg |
19975655 |
T |
|
| Q |
204 |
tgttaag |
210 |
Q |
| |
|
||||||| |
|
|
| T |
19975656 |
tgttaag |
19975662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 15516292 - 15516378
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggccta |
90 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||| ||||||| |||||| |||||| ||||| ||||| ||||||| ||||||| |
|
|
| T |
15516292 |
cctatatgggtgtcaagtggagccgcttgcatgagaccgtggcgggtctctagagcactcatgaagaccagacacgcgcttggccta |
15516378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 14922677 - 14922712
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgaga |
39 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14922677 |
cctatgtgagtgtcaagtggggccgcttgtatgaga |
14922712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 1968089 - 1968331
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||||| |||||||||||| | |||| ||||| ||||| |
|
|
| T |
1968089 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaatatcaggcacgcgcacgacctat-tagcggacaac |
1968187 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||||||||| | ||||||||||| || |||||||||||||||||| ||||| || |
|
|
| T |
1968188 |
cgcgtaacagcaagaattgtgggggtgtaatgtgattgtgagacctctaacatacaataagtgtcttggatttcatagcttgctaaaccaactcactgtg |
1968287 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
1968288 |
tgttaagtcttattagtttaggacaggttccatagcttgctata |
1968331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 49388354 - 49388116
Alignment:
| Q |
6 |
tatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaacgg |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||| |||||| | |||| ||||||| ||||||||| || ||||| ||||||||||| | |
|
|
| T |
49388354 |
tatatgagtgtcaagtggggccgcttgcatgagaccatggcgggtctctagaacactcatgaatatcaggcacgcacacggcctct-tagcgcacaaccg |
49388256 |
T |
|
| Q |
106 |
cgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgtg |
205 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
49388255 |
cgtaacagcaagaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgggttccatagcttgttaaaccaattcactgtgtg |
49388156 |
T |
|
| Q |
206 |
ttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
49388155 |
ttaagtctcattagtctaagacgggttccatagcttgcta |
49388116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 38826265 - 38826034
Alignment:
| Q |
10 |
tgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaacggcgta |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| | |||||| |||||| |||||||||| | ||||||| || ||| |||| |||||| ||||| |
|
|
| T |
38826265 |
tgagtgtcaagtggggccgcttgcatgagattgtggctggtctctagagcactcatgaataccaagtacgcgcacggtctat-tagcacacaaccgcgta |
38826167 |
T |
|
| Q |
110 |
acaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgtgttaa |
209 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
38826166 |
acaa---gaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgggttccatagcttgctaaaccaattcaatgtgtgttaa |
38826070 |
T |
|
| Q |
210 |
gtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||| ||| ||| |||| ||||||||||||||||| |
|
|
| T |
38826069 |
gtctcatttatctaggacgggttccatagcttgcta |
38826034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 24172371 - 24172611
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||| || || ||||| || ||||||||| ||||| || |
|
|
| T |
24172371 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaaaacgagacacgcacacggcctaaat-gcgcaacac |
24172469 |
T |
|
| Q |
104 |
ggcg-taacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
||| | ||| | |||||||||||||||||||||| ||| | ||||||| |||| | ||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
24172470 |
agcgattacacga-gaattgtgggggtgtaatgtgattgttaaacctctagcatacatcaagtgtattgggttccatagcttgctaaaccaattcactgt |
24172568 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
||||||||||| || ||||| |||| ||||||||||||||||| |
|
|
| T |
24172569 |
gtgttaagtctcatcagtctaggacgggttccatagcttgcta |
24172611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 47325241 - 47325441
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatg--------gcctaaatag |
95 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||||||| ||||| | |||||| |||||| ||||| ||||| |||||||| | |||||||| | |
|
|
| T |
47325241 |
cctatatgagtgtgaagtagggccgcttgcatgagaccgtggcaggtctctagagcactcatgaaaaccagacacgcgcacgcccgcacggcctaaat-g |
47325339 |
T |
|
| Q |
96 |
cgcacaacggcg-taacaacatgaattgtgggg-gtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaacca |
193 |
Q |
| |
|
|||| || ||| | ||| || ||||||||||| ||||||||||| | |||||||||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
47325340 |
cgcaacacagcgatgaca-caagaattgtggggggtgtaatgtgattatgagacctctaacatacatcaagtgtattgggttccatagcttgctaaacca |
47325438 |
T |
|
| Q |
194 |
att |
196 |
Q |
| |
|
||| |
|
|
| T |
47325439 |
att |
47325441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 31183089 - 31183332
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcgga-tctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| | |||||| |||||| ||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
31183089 |
cctatatgagtgtcaagtggggccgcttgcatgagatcttggcaaaatctctagagcactcatgaataccaggcacgcgcatggcctat-tcgcgcacaa |
31183187 |
T |
|
| Q |
103 |
cggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31183188 |
ccgcgtaacagcaagaattgtgggggtgtaatgtgattgtgagacctctaacatacaacaagtgtcttgggttccatagcttgctaaaccaattcaccgt |
31183287 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||| |||| |
|
|
| T |
31183288 |
gtgttaagttttattagtctaagacgggttccatagcttggtata |
31183332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 38677919 - 38678153
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||| ||||| | |||||| |||||| | |||||||| ||||||||| |||||| || |||||||| |
|
|
| T |
38677919 |
cctatatgggtgtcgagtggggccgcttgcatgagaccgtggcaggtctctagagcactcacgaataccaagcacgcgcacggcctat-taacgcacaac |
38678017 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
38678018 |
cgcgtaacagcaagaattgtgggg-tgtaatgtgattgtgagacctctaacatacaacaagtgtcttgg-ttccatagcttgctaaatcaattcactgtg |
38678115 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagctt |
241 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
38678116 |
tgttaagtcttattagtctaggacatgtttcatagctt |
38678153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 38641639 - 38641406
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| ||||| ||||| |||||||| ||||||||| ||||| || |
|
|
| T |
38641639 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcatgaaaaccagacacgcgcacggcctaaat-gcgcaacac |
38641541 |
T |
|
| Q |
104 |
ggc-gtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
|| | || || |||||||||||||||||||||| | ||||||||||| |||| | ||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
38641540 |
agctattac-acgagaattgtgggggtgtaatgtgattatgagacctctagcatacatcaagtatattgggttccataacttgctaaaccaattca---- |
38641446 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
38641445 |
---ttaagtctcattagtctaggacgggttccatagcttgcta |
38641406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 43657249 - 43657363
Alignment:
| Q |
123 |
tgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatgtgttaagtcttattagtct |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| | ||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43657249 |
tgggggtgtaatgtgattgtgagacctctagcatacatcaagtgtattgagttccatggcttgttaaaccaattcactatgtgttaagtcttattagtct |
43657348 |
T |
|
| Q |
223 |
gggacaggttccata |
237 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
43657349 |
aggacgggttccata |
43657363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 43657161 - 43657202
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtgg |
45 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
43657161 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtgg |
43657202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 29278396 - 29278428
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatg |
36 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
29278396 |
cctatgtgagtgtcaagtggggccgcttgtatg |
29278428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 86297 - 86540
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcgga-tctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| | |||||| | |||| ||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
86297 |
cctatatgagtgtcaagtggggccgcttgcatgagatcttggcaaaatctctagaacactcatgaataccagacacgcgcatggcgtat-tagcgcacaa |
86395 |
T |
|
| Q |
103 |
cggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
| | ||||||||| ||||||||| |||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
86396 |
ccgtgtaacaacaagaattgtggaggtgtaatgtgattacgagacctctaacatacaacaagtgtcttgggttccatagcttgctaaaccaattcactgt |
86495 |
T |
|
| Q |
203 |
gtgttaagtcttattagtctgggacaggttccatagcttgctata |
247 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
86496 |
gtgttaagtcttattagtctaggacgggttccctagcttgctata |
86540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 127014 - 127243
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| | ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
127014 |
cctatatgagtgtcaagtggggccgcttgcatgagaccgtggcgggtctctagagcactcaagaataccaggcacgcgcatggtctat-tagcgcacaac |
127112 |
T |
|
| Q |
104 |
ggcgtaacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactatg |
203 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
127113 |
-----------aagaattgtgggggtgtaatgtgattgtgagacctcttgcatacaacaagtgtcttgggttccatagcttgctaaaccaattcactatg |
127201 |
T |
|
| Q |
204 |
tgttaagtcttattagtctgggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||||| |||||||| ||||| ||| |||||||||||| |
|
|
| T |
127202 |
tgttaagtctcattagtctaggacaagttacatagcttgcta |
127243 |
T |
|
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Target: scaffold0012 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 201738 - 201979
Alignment:
| Q |
4 |
cctatatgagtgtcaagtggggccgcttgtatgagactgtggcggatctctatagcacttatgaataccaggcacgcgcatggcctaaatagcgcacaac |
103 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||| | |||||| |||||| ||||| ||||| || ||| ||||||||| ||||| || |
|
|
| T |
201738 |
cctatatgagtgttaagtggggccgcttgcatgagaccgtggtaggtctctagagcactcatgaaaaccagacatatgcacggcctaaat-gcgcaacac |
201836 |
T |
|
| Q |
104 |
ggcg-taacaacatgaattgtgggggtgtaatgtgactgtgagacctctaacatatagcaagtgtcttgggttccatagcttgctaaaccaattcactat |
202 |
Q |
| |
|
||| | ||| | |||||||||||||||||||||| | ||||||||||| ||| | ||||||| ||||||| |||||||||||||||||||||| | | |
|
|
| T |
201837 |
agcgattacacga-gaattgtgggggtgtaatgtgattttgagacctctaggatacatcaagtgtattgggtttcatagcttgctaaaccaattcagtgt |
201935 |
T |
|
| Q |
203 |
gtgttaagtcttattagtct-gggacaggttccatagcttgcta |
245 |
Q |
| |
|
|||||||| || |||||||| ||| ||||||||||||||||| |
|
|
| T |
201936 |
gtgttaagactcattagtctaatgacgggttccatagcttgcta |
201979 |
T |
|
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