View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_227 (Length: 261)
Name: NF11324A_low_227
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_227 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 46239898 - 46240158
Alignment:
| Q |
1 |
tcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctga |
100 |
Q |
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| T |
46239898 |
tcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgatgctga |
46239997 |
T |
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| Q |
101 |
ttgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggatta |
200 |
Q |
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| T |
46239998 |
ttgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccaggatta |
46240097 |
T |
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| Q |
201 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatg |
261 |
Q |
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| T |
46240098 |
caacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtttacaaatg |
46240158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 23541295 - 23541541
Alignment:
| Q |
4 |
tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg |
103 |
Q |
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| T |
23541295 |
tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag |
23541394 |
T |
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| Q |
104 |
tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa |
203 |
Q |
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| T |
23541395 |
gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa |
23541494 |
T |
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| Q |
204 |
cccaggtttggatctttttacttttgttttgatggctgcaaaaaagg |
250 |
Q |
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| T |
23541495 |
cccaggtttggttctttctacttttgttttgatggctgtaagaaagg |
23541541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 45 - 261
Target Start/End: Complemental strand, 3437537 - 3437321
Alignment:
| Q |
45 |
ggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaa |
144 |
Q |
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| T |
3437537 |
ggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaa |
3437438 |
T |
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| Q |
145 |
gagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaa |
244 |
Q |
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| T |
3437437 |
gagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggatgcaa |
3437338 |
T |
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| Q |
245 |
aaaagggtttacaaatg |
261 |
Q |
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| T |
3437337 |
aaaagggtttacaaatg |
3437321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3437569 - 3437534
Alignment:
| Q |
1 |
tcatggatgacatgaggacgaatcatgcagtgggta |
36 |
Q |
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| T |
3437569 |
tcatcgatgacatgaggacgaatcatgcagtgggta |
3437534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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