View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_232 (Length: 258)
Name: NF11324A_low_232
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_232 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 37181778 - 37181526
Alignment:
| Q |
1 |
aattctttttcatcatacttctcgtgcgtcccttgttttgtcgaaaatattttcgttcggattttaaaatttagagtgtgtttttcttgttcgaaatata |
100 |
Q |
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| T |
37181778 |
aattctttttcaccatacttctcgtgcgtcccttgttttctcgaaaatattttcgtttggattttaaaatttagagtgtgtttttcttgttcggaatata |
37181679 |
T |
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| Q |
101 |
taatctgaacgcattgtacatactatttgaatttgttctcttccaccacacttttattttatgaaattactcagtttagattatactataaatacatcaa |
200 |
Q |
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| T |
37181678 |
taatccgaacacattgtacatactatttgaatccgttctcttccaccaca-ttttattttatgaaattactctgtttagattatactataaatgcatcaa |
37181580 |
T |
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| Q |
201 |
ctttagttaattaatttgtctctcataaaaatgatcggaggtagtataatttag |
254 |
Q |
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| T |
37181579 |
ctttagttaattaatttgtctctcataaaaatgatcggagagagtataatttag |
37181526 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 33012940 - 33012981
Alignment:
| Q |
190 |
aaatacatcaactttagttaattaatttgtctctcataaaaa |
231 |
Q |
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| T |
33012940 |
aaatacatcaactttagttaatccatttgtctcttataaaaa |
33012981 |
T |
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