View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_246 (Length: 251)
Name: NF11324A_low_246
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_246 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3067555 - 3067317
Alignment:
| Q |
1 |
acaaaggatctgtactactctaagattttgaatggcacttattggcatcaaaacgattatacgcatctaaagccttttattgaagtacaatgtattctag |
100 |
Q |
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| T |
3067555 |
acaaaggatctgtactactctaagattttgaatggcacttattggcatcaaaacgattatacgcatctaaagccttttattgaagtacaatgtattatag |
3067456 |
T |
|
| Q |
101 |
cttgtatggaagactgcatgtattattatttgtttatattctggcacattgatatttgatatatccttgatgttcaatttcacatgttatcaacaacttg |
200 |
Q |
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| T |
3067455 |
cttgtatggaagactgcatgtattattatttgtttatattctggcacattgatatttgatatatccttgatgttcaatttcacatgttatcaacaacttg |
3067356 |
T |
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| Q |
201 |
actatataaataattaatagttatttattctctaatttt |
239 |
Q |
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| T |
3067355 |
actatataaataattaatagttatttattctctaatttt |
3067317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 3052679 - 3052615
Alignment:
| Q |
173 |
ttcaatttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaatttt |
239 |
Q |
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| T |
3052679 |
ttcaatttcatatgatatcaacaacttgactatataaata--gaatagttatttattctctaatttt |
3052615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 6769824 - 6769879
Alignment:
| Q |
178 |
tttcacatgttatcaacaacttgactatataaataattaatagttatttattctctaa |
235 |
Q |
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| T |
6769824 |
tttcatatgttatcaacaacttcactctata--taattaatagttatttattctctaa |
6769879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 31458845 - 31458811
Alignment:
| Q |
205 |
tataaataattaatagttatttattctctaatttt |
239 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
31458845 |
tataaataattagtagttatttattctctaatttt |
31458811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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