View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_25 (Length: 434)
Name: NF11324A_low_25
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 23 - 434
Target Start/End: Original strand, 3884042 - 3884453
Alignment:
| Q |
23 |
cttggcatgcttctagctactgctactggaaataatctcaaaataattgatgttgagactgataaacttgtgtacaatctaaaggtaacttaaagattaa |
122 |
Q |
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| T |
3884042 |
cttggcatgcttctagctactgctactggaaataatctcaaaataattgatgttgagactgataaacttgtgtacaatctaaaggtaacttaaagattaa |
3884141 |
T |
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| Q |
123 |
ttcttatctatagtataccttggtacttacctttcatttcaccgcttgaatgttgtgttttgtaacatactatcataactgaattttgtttcattttagg |
222 |
Q |
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| T |
3884142 |
ttcttatctatagtataccttggtacttacctttcatttcaccgcttgaatgttgtgttttgcaacatactatcataactgaattttgtttccttttagg |
3884241 |
T |
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| Q |
223 |
gacatgataaagatgttctttccatttgttgggatagaacgggaaagtatattgcctctgtcagtgaagattgtgcacgagtctggtcggacggagaatg |
322 |
Q |
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| T |
3884242 |
gacatgataaagatgttctttccatttgttgggatagaacgggaaagtatattgcctctgtcagtgaagattgtgcacgagtctggtcgaacggagaatg |
3884341 |
T |
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| Q |
323 |
catcggcgagttgcattcaaacgggaacaagtttcaatcgtgcatatttcatccgggatattgtaacctcttagttattggtggctatcaggtaagccct |
422 |
Q |
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| T |
3884342 |
catcggcgagttgcattcaaacgggaacaagtttcaatcgtgcatatttcatccgggatattgtaacctcttagttattggtggctatcaggtaagccct |
3884441 |
T |
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| Q |
423 |
tcttccatcatg |
434 |
Q |
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| T |
3884442 |
tcttccatcatg |
3884453 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 35240846 - 35240794
Alignment:
| Q |
273 |
attgcctctgtcagtgaagattgtgcacgagtctggtcggacggagaatgcat |
325 |
Q |
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| T |
35240846 |
attgcctctgtcagtgaagatgatgtacgtgtctggtcggacggacaatgcat |
35240794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 35237828 - 35237790
Alignment:
| Q |
273 |
attgcctctgtcagtgaagattgtgcacgagtctggtcg |
311 |
Q |
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| T |
35237828 |
attgcctctgtcactgaagattgtgcacgtgtctggtcg |
35237790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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