View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_258 (Length: 250)

Name: NF11324A_low_258
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_258
NF11324A_low_258
[»] chr6 (14 HSPs)
chr6 (21-146)||(17095606-17095739)
chr6 (21-93)||(16870346-16870418)
chr6 (57-183)||(17067043-17067177)
chr6 (28-93)||(16985125-16985190)
chr6 (21-61)||(16794920-16794960)
chr6 (21-65)||(16841534-16841578)
chr6 (94-183)||(16655635-16655728)
chr6 (21-72)||(16975728-16975779)
chr6 (136-171)||(16985033-16985068)
chr6 (21-56)||(17067196-17067231)
chr6 (21-51)||(16655782-16655812)
chr6 (23-51)||(16558494-16558522)
chr6 (21-49)||(16778898-16778926)
chr6 (21-49)||(16784994-16785022)
[»] chr3 (2 HSPs)
chr3 (21-143)||(7055690-7055816)
chr3 (21-61)||(38941762-38941802)
[»] chr8 (1 HSPs)
chr8 (21-106)||(13375738-13375832)
[»] scaffold0133 (3 HSPs)
scaffold0133 (21-61)||(10558-10598)
scaffold0133 (21-61)||(15855-15895)
scaffold0133 (21-49)||(6222-6250)
[»] scaffold0256 (1 HSPs)
scaffold0256 (21-49)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 17095739 - 17095606
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa--------aatttaatgaatctcttta 112  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||        |||||||||||||||||||    
T  17095739 aagattggcattagatagctcacattcctgaatttgaattggaaactgatgcaaaaccaacatttcgtggtaatttaatttaatttaatgaatctcttta 17095640  T
Q  113 cttgttcatttatcttttgtcttactatatcaaa 146  Q
    ||||||||||||||||||||||||||||||||||    
T  17095639 cttgttcatttatcttttgtcttactatatcaaa 17095606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 16870346 - 16870418
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 93  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||| |||||||    
T  16870346 aagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggtaa 16870418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 17067177 - 17067043
Alignment:
Q  57 aattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctctttacttgtt--catttatcttttgtcttactata---tcaaatt 148  Q
    ||||| ||||||||| |||||||||| || |||||||   ||||||| ||||||||| | || ||  | ||| | |||||||||||||||   | |||||    
T  17067177 aattgcaatctgatgcaaaaccaacaatttgtggtaatttaatttaacgaatctcttaattttttttcctttcttttttgtcttactatagaataaaatt 17067078  T
Q  149 atatagtgtgattttagacttattatattgaacaa 183  Q
    ||||| |||||||||||||||||||||||||||||    
T  17067077 atatactgtgattttagacttattatattgaacaa 17067043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 16985190 - 16985125
Alignment:
Q  28 gcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 93  Q
    |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | ||||||    
T  16985190 gcataagatagctcacattcctgaattttattttgaatctggtgcaaaaccaacattccctggtaa 16985125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 16794960 - 16794920
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattg 61  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  16794960 aagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 16841578 - 16841534
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattggaat 65  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||    
T  16841578 aagattggcataagatagctcacattcctagattgaaattggaat 16841534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 16655728 - 16655635
Alignment:
Q  94 aatttaatgaatctctttacttg-ttcatttatcttttgtcttactata---tcaaattatatagtgtgattttagacttattatattgaacaa 183  Q
    ||||||| ||||| ||||| ||| ||| ||| |||||||| ||||||||   |||||| | || |||||||| |||||||||||||||||||||    
T  16655728 aatttaacgaatccctttatttgattcctttgtcttttgtgttactataatatcaaatcagatggtgtgattatagacttattatattgaacaa 16655635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 16975728 - 16975779
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgt 72  Q
    |||||||| |||||| ||||||  ||||| ||||||||||||||||||||||    
T  16975728 aagattggtataagacagctcatgttcctaaatttaaattggaatctgatgt 16975779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 16985068 - 16985033
Alignment:
Q  136 actatatcaaattatatagtgtgattttagacttat 171  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16985068 actatatcaaattatatggtgtgattttagacttat 16985033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 17067231 - 17067196
Alignment:
Q  21 aagattggcataagatagctcacattcctgaattta 56  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17067231 aagattggcataaaatagctcacattcctgaattta 17067196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 16655812 - 16655782
Alignment:
Q  21 aagattggcataagatagctcacattcctga 51  Q
    |||||||||||||||||||||||||||||||    
T  16655812 aagattggcataagatagctcacattcctga 16655782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 16558494 - 16558522
Alignment:
Q  23 gattggcataagatagctcacattcctga 51  Q
    |||||||||||||||||||||||||||||    
T  16558494 gattggcataagatagctcacattcctga 16558522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 16778926 - 16778898
Alignment:
Q  21 aagattggcataagatagctcacattcct 49  Q
    |||||||||||||||||||||||||||||    
T  16778926 aagattggcataagatagctcacattcct 16778898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 16785022 - 16784994
Alignment:
Q  21 aagattggcataagatagctcacattcct 49  Q
    |||||||||||||||||||||||||||||    
T  16785022 aagattggcataagatagctcacattcct 16784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 7055690 - 7055816
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctcttta-cttg 116  Q
    |||||||||||||||||||||||||||| | ||| | |||||||||||||| |||| || ||||| |||||||   |||||||| |||| |||||  ||     
T  7055690 aagattggcataagatagctcacattccggcattgatattggaatctgatgcaaaaacatcattttgtggtaatttaatttaatcaatccctttatatta 7055789  T
Q  117 ttcatttatcttttgtcttactatatc 143  Q
    ||| ||| |||||| ||||||||||||    
T  7055790 ttcctttctcttttttcttactatatc 7055816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38941762 - 38941802
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattg 61  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  38941762 aagattggcataagatagctcacattcctgaatttgaattg 38941802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 13375832 - 13375738
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattggaatc------tgatgtaaaaccaacatttcgtggtaa---aatttaatgaatc 106  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||      ||||| ||||||||||||| |||||||   |||||||||||||    
T  13375832 aagattgggataagatagctcacatacctgaagttgaattggaatctaaatttgatgcaaaaccaacattttgtggtaatttaatttaatgaatc 13375738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 10598 - 10558
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattg 61  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  10598 aagattggcataagatagctcacattcctgaagttgaattg 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 15895 - 15855
Alignment:
Q  21 aagattggcataagatagctcacattcctgaatttaaattg 61  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  15895 aagattggcataagatagctcacattcctcaatttcaattg 15855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 6250 - 6222
Alignment:
Q  21 aagattggcataagatagctcacattcct 49  Q
    |||||||||||||||||||||||||||||    
T  6250 aagattggcataagatagctcacattcct 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 6909 - 6881
Alignment:
Q  21 aagattggcataagatagctcacattcct 49  Q
    |||||||||||||||||||||||||||||    
T  6909 aagattggcataagatagctcacattcct 6881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University