View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_264 (Length: 250)

Name: NF11324A_low_264
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_264
NF11324A_low_264
[»] chr1 (11 HSPs)
chr1 (9-153)||(13244107-13244251)
chr1 (158-250)||(13244450-13244542)
chr1 (152-248)||(13080788-13080884)
chr1 (84-153)||(12963575-12963644)
chr1 (79-146)||(19278827-19278894)
chr1 (9-88)||(19278730-19278809)
chr1 (150-201)||(19279089-19279140)
chr1 (151-195)||(12963797-12963841)
chr1 (157-201)||(13094619-13094663)
chr1 (157-201)||(13130048-13130092)
chr1 (157-201)||(13161741-13161785)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  9 gagaagaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 108  Q
    |||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  109 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 13244450 - 13244542
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttacggccatttcctccgctggcctttcagcacaagcgtgctatcaaatctg 250  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| || |||||| ||||| |||||||||||| | |||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctg 13244542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 13080788 - 13080884
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttacggccatttcctccgctggcctttcagcacaagcgtgctatcaaatc 248  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| || |||| |  | || |||||||||||| |||||||||||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatc 13080884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  9 gagaagaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 88  Q
    ||||||||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 19279089 - 19279140
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaacctta 201  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagcctta 19279140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 12963797 - 12963841
Alignment:
Q  151 aaagagcttgataagcttgtttaccttcatggagccatatgtgaa 195  Q
    |||| |||||||||||||||||| ||||||||||| || ||||||    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaa 12963841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 13094663 - 13094619
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaacctta 201  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaacctta 13094619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 13130092 - 13130048
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaacctta 201  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaacctta 13130048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 13161785 - 13161741
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaacctta 201  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaacctta 13161741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University