View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_269 (Length: 249)
Name: NF11324A_low_269
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_269 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 28126290 - 28126109
Alignment:
| Q |
10 |
aagaaaatcactgatattatgaagaagcgtttgtcaatctccatctagtaaaatgttttccaaagtgactctgggcagtaagcatatttcaaaagtacca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28126290 |
aagaaaatcactgatattatgaagaagcgtttgtcaatctccatctagtaaaatgttttccaaagtgactctgggcagtaagcatatttcaaaagtacca |
28126191 |
T |
|
| Q |
110 |
atcaactaaaacaaaggaaagtcaaaattaactacaatgaaaatgtctaaactgtgtagcacaacttgcaataaactaaaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28126190 |
atcaactaaaacaaaggaaagtcaaaattaactacaatgaaaatatctaaactgtgtagcacaacttgcaataaactaaaag |
28126109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 29677865 - 29677684
Alignment:
| Q |
10 |
aagaaaatcactgatattatgaagaagcgtttgtcaatctccatctagtaaaatgttttccaaagtgactctgggcagtaagcatatttcaaaagtacca |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
29677865 |
aagaaaatcactgatgttatgaagaagcgtttatcaatctcaatctaataaagtgttttccaaagagactccaggcagtaagcatatttcaaaagtacca |
29677766 |
T |
|
| Q |
110 |
atcaactaaaacaaaggaaagtcaaaattaactacaatgaaaatgtctaaactgtgtagcacaacttgcaataaactaaaag |
191 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29677765 |
atcaactaaaacaaaggaaactcaaaattaactacaatgaaaatgtctaaaccatgtagcacaacttgcaataaactaaaag |
29677684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 29424640 - 29424672
Alignment:
| Q |
214 |
agaatatttaagggaccaaattgaaacacttta |
246 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
29424640 |
agaatattcaagggaccaaattgaaacacttta |
29424672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University