View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_27 (Length: 433)
Name: NF11324A_low_27
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 42667926 - 42668262
Alignment:
| Q |
6 |
aaggaagccacaaaatatggcaaagagaacaagcaaaaggttaagggaatcccaactcttttttaccgaattaggtttgaaaatgtgggaagcgaaagag |
105 |
Q |
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| T |
42667926 |
aaggaagccacaaaatatggcaaagagaacaagcaaaaggttaagggaatcccaactcttttttactgaattaggattgaaaatgtgggaagcgaaagag |
42668025 |
T |
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| Q |
106 |
tgcaatgtaggaactatgactaagatgaacgcaagtgcaattactagaaggactatgataacagtgccggagctgaggaaaagtgagtatgagcgactga |
205 |
Q |
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| T |
42668026 |
tgcaatgtaggaactatgactaagatgaacgcaagtgcaattactagaaggactatgataacagtgccggagctgaggaaaagtgagtatgagcgactga |
42668125 |
T |
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| Q |
206 |
ggcggcggcggttggtgccactgttttgcagccagaagggtgaagaaatttgttcctcttcttccatttagttttggtttgatgccaaatggttgatgtt |
305 |
Q |
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| T |
42668126 |
ggcggcggcggttggtgccgctgttttgcagccagaagggtgaagaaatttgttcctcttcttccatttagttttggtttaatgccaaatggttgatgtt |
42668225 |
T |
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| Q |
306 |
ttgaaacttggtgtggaagaaaatatgatcttcaatt |
342 |
Q |
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| T |
42668226 |
ttgaaacttggtgtggaagaaaatatgatcttcaatt |
42668262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 42668288 - 42668365
Alignment:
| Q |
341 |
ttgctttggttttgttctgttctgttttttgtgctatttggttgcttatatagtgtggaatgtggatggcatgattat |
418 |
Q |
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| T |
42668288 |
ttgctttggtttttttttgttctgttttttgtgctctttggttgcttatatagtgtggaatgtggatggcatgattat |
42668365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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