View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_271 (Length: 249)
Name: NF11324A_low_271
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_271 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 24666621 - 24666847
Alignment:
| Q |
11 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24666621 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
24666720 |
T |
|
| Q |
111 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| | |
|
|
| T |
24666721 |
cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca |
24666820 |
T |
|
| Q |
211 |
accattgattcaatcaaacggtatttt |
237 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
24666821 |
accattgattcaatcaaacggtatttt |
24666847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 34941782 - 34941551
Alignment:
| Q |
11 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34941782 |
agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
34941683 |
T |
|
| Q |
110 |
acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta |
209 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
34941682 |
acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc |
34941583 |
T |
|
| Q |
210 |
aaccattgattcaatcaaacggtattttcttc |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
34941582 |
aaccgttgattcaatcaaacggtattttcttc |
34941551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 18363426 - 18363653
Alignment:
| Q |
11 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
18363426 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
18363523 |
T |
|
| Q |
111 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
210 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
18363524 |
cagatttcaggggagttgaa--ggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
18363621 |
T |
|
| Q |
211 |
accattgattcaatcaaacggtattttcttcg |
242 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |
|
|
| T |
18363622 |
accattgattcaatcgaatggtattttcttcg |
18363653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 36599502 - 36599275
Alignment:
| Q |
11 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
36599502 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
36599405 |
T |
|
| Q |
111 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
210 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
36599404 |
cagatttcaggggagttgaa--ggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
36599307 |
T |
|
| Q |
211 |
accattgattcaatcaaacggtattttcttcg |
242 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |
|
|
| T |
36599306 |
accattgattcaatcgaatggtattttcttcg |
36599275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
| Q |
58 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
133 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||| | | | |||| || |||||||||||||||||||| |
|
|
| T |
8752465 |
tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag |
8752390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
| Q |
11 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
109 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26240615 |
agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
26240714 |
T |
|
| Q |
110 |
acagatttcagaggagttgaa |
130 |
Q |
| |
|
||| |||||| ||||||||| |
|
|
| T |
26240715 |
acatatttcaagggagttgaa |
26240735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 26240779 - 26240870
Alignment:
| Q |
150 |
agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtattttcttc |
241 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26240779 |
agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttc |
26240870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 53242900 - 53242714
Alignment:
| Q |
58 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca |
156 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
53242900 |
tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca |
53242801 |
T |
|
| Q |
157 |
agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtattttcttcg |
242 |
Q |
| |
|
| ||| | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
53242800 |
aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtattttcttcg |
53242714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 43479315 - 43479510
Alignment:
| Q |
35 |
tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
133 |
Q |
| |
|
|||| ||||||| || | |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
43479315 |
tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa |
43479403 |
T |
|
| Q |
134 |
gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggta |
233 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| |||||||||| ||||||| || | | ||||||||||| |||||||| ||||||||| | || |
|
|
| T |
43479404 |
gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct-aaaaaaaatattaataaatcttgaccattgaatcaatcaaatgata |
43479502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 237
Target Start/End: Complemental strand, 19697568 - 19697410
Alignment:
| Q |
71 |
aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa |
170 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| | || ||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19697568 |
aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa |
19697476 |
T |
|
| Q |
171 |
aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatttt |
237 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| ||||||| |
|
|
| T |
19697475 |
aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtatttt |
19697410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 13265651 - 13265594
Alignment:
| Q |
180 |
atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatttt |
237 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
13265651 |
atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtatttt |
13265594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
| Q |
121 |
aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgatt |
220 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||| |||| ||||||| || ||||||||||||| |||| ||||||||| |||||||| | |
|
|
| T |
32566462 |
aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat |
32566558 |
T |
|
| Q |
221 |
caatc |
225 |
Q |
| |
|
||||| |
|
|
| T |
32566559 |
caatc |
32566563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University