View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_274 (Length: 249)
Name: NF11324A_low_274
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_274 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 43239342 - 43239104
Alignment:
| Q |
11 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
110 |
Q |
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| T |
43239342 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
43239243 |
T |
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| Q |
111 |
ttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacactcattaatga |
210 |
Q |
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| T |
43239242 |
ttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacacccattaatga |
43239143 |
T |
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| Q |
211 |
tgttaacaattactaacaaaacagcatagacacatgtat |
249 |
Q |
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|||||||||||||||||||||||||||||| | |||||| |
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| T |
43239142 |
tgttaacaattactaacaaaacagcatagaaaaatgtat |
43239104 |
T |
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