View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_275 (Length: 249)
Name: NF11324A_low_275
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_275 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 43233443 - 43233203
Alignment:
| Q |
8 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233443 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
43233344 |
T |
|
| Q |
108 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtatt---gctgatattggacacctaaacacacttgcatccca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |
|
|
| T |
43233343 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtattgctgctgatattggacacctaaacaaacttgcatccga |
43233244 |
T |
|
| Q |
205 |
aatttaatttgaaagggtgacactgcaaacttttcccactcctta |
249 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43233243 |
aat----tttgaaagggtgacactgccaacttttcccactcctta |
43233203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 31982982 - 31982922
Alignment:
| Q |
82 |
acttgcaggggtgacaaaattacaattgaaagaaatacatttgatttgaaacatatgagta |
142 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
31982982 |
acttgcaggtgtgacaaagttacaattgaaagaaaaacattagattcaaaacgtatgagta |
31982922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 8024395 - 8024261
Alignment:
| Q |
8 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
107 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| | |||||| |||| || |
|
|
| T |
8024395 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
8024296 |
T |
|
| Q |
108 |
tgaaagaaatacatttgatttgaaacatatgagta |
142 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
8024295 |
tgaaagaaaaacattagattcaaaacgtatgagta |
8024261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 18647618 - 18647484
Alignment:
| Q |
8 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
107 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| | |||||| |||| || |
|
|
| T |
18647618 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
18647519 |
T |
|
| Q |
108 |
tgaaagaaatacatttgatttgaaacatatgagta |
142 |
Q |
| |
|
||||||||| |||| |||| |||| |||||||| |
|
|
| T |
18647518 |
tgaaagaaaatcattagattcaaaacgtatgagta |
18647484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University