View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_278 (Length: 248)
Name: NF11324A_low_278
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_278 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 37766244 - 37766010
Alignment:
| Q |
8 |
gacacttccaccttctataactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacc |
107 |
Q |
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| T |
37766244 |
gacacttccaccttctataactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgatggatcggagttcctcctacccgatacaacc |
37766145 |
T |
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| Q |
108 |
tcgaaaagcatcattccgtagctataagcatcggctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatgg |
207 |
Q |
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| T |
37766144 |
tcgaaaagcatcattccgtagctataaacatcagctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatgg |
37766045 |
T |
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| Q |
208 |
ttgttaggaccctgctgaaatctcgtccgaccagc |
242 |
Q |
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| T |
37766044 |
ttgttaggaccctgctgaaatctcgtccgaccagc |
37766010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 37799519 - 37799729
Alignment:
| Q |
25 |
taactacttttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattcc |
124 |
Q |
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| T |
37799519 |
taactactgtagcagccaaggttggaaagaaagtattttggtcatctgcagatggatcagaattccttttacctgatacaacctcaaaaagcatcattcc |
37799618 |
T |
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| Q |
125 |
gtagctataagcatcggctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatggttgttaggaccctgctg |
224 |
Q |
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| T |
37799619 |
ataactgtaaacatcagatttggctgtgatagcagccctagatatccactctggggaaagatagcctcttgatccttccatgtttgtaaggattcttctg |
37799718 |
T |
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| Q |
225 |
aaatctcgtcc |
235 |
Q |
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| T |
37799719 |
aaatctcgtcc |
37799729 |
T |
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Target: scaffold0280 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 16407 - 16214
Alignment:
| Q |
33 |
tttgcagctaaggtaggaaagaaagtaacttgaccatcttctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattccgtagctat |
132 |
Q |
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| T |
16407 |
tttgcagctaaggtaggaaagaatctaacatggccatcttcagaaggatcggagtttcttctacctgacactagctcgaaaagcatcattccgtagctgt |
16308 |
T |
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| Q |
133 |
aagcatcggctttggctgtaatagccacgccagaaatccactccggagcaaggtagcctcttgttcctctcatggttgttaggaccctgctgaa |
226 |
Q |
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| T |
16307 |
aaacatcggctttagcggttatagcaactcctgaaatccactctggagctagatagcctcttgttcctctcatggtagtgaggacccggctgaa |
16214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 38388258 - 38388077
Alignment:
| Q |
33 |
tttgcagctaaggtaggaaagaaagtaacttgaccatctt----ctgaaggatcggagttcctcctacctgatacaacctcgaaaagcatcattccgtag |
128 |
Q |
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| T |
38388258 |
tttgcagccaaagtaggaaagaatctaacatggccatcttaattcggaaggatcagagtttcttcttcctgacacgagctcgaaaagcatcattctgtag |
38388159 |
T |
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| Q |
129 |
ctataagcatcggctttggctgtaatagccacgccagaaatccac---tccggagcaaggtagcctcttgttcctctcatgg |
207 |
Q |
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| T |
38388158 |
ttgtaaacatcggctttagcggttatagaaactcccgaaatccactcatctggagctagatagcctcttgttcctctcatgg |
38388077 |
T |
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