View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_280 (Length: 248)
Name: NF11324A_low_280
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_280 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4584669 - 4584437
Alignment:
| Q |
1 |
tatggaatgttagatgaaattcggacagttttttgtttgaattttgaaatcggatttacataaaacttaaaattataaccatctgatcttcatatatggc |
100 |
Q |
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| T |
4584669 |
tatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggatttacataaaacttaaaattataaccatccgatcttcatatatggc |
4584570 |
T |
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| Q |
101 |
cgagattacaacagtaggaaatgctgactgcaaatcatgacagggaaaaacatttgtctagattaatctcattctacatattctttgacaggatttgtca |
200 |
Q |
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| T |
4584569 |
cgagattacaacagtaggaaatgctgactgcaaatcatgacagggtaaaatatttgtctagattaatctcattctacatattctttgacaggatttgtca |
4584470 |
T |
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| Q |
201 |
cattgtactaaaacagctttcaaaactcttgag |
233 |
Q |
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| T |
4584469 |
cattgtactgaaacagctttcaaaactcttgag |
4584437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 4592267 - 4592181
Alignment:
| Q |
147 |
aaaacatttgtctagattaatctcattctacatattctttgacaggatttgtcacattgtactaaaacagctttcaaaactcttgag |
233 |
Q |
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| T |
4592267 |
aaaacattggtctagattaatctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgag |
4592181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 4573293 - 4573210
Alignment:
| Q |
150 |
acatttgtctagattaatctcattctacatattctttgacaggatttgtcacattgtactaaaacagctttcaaaactcttgag |
233 |
Q |
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| T |
4573293 |
acattggtctagattaatctcatcctacatattctttgacaggatatatcacattgtactgaaacagctttccaaactgttgag |
4573210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 4600682 - 4600618
Alignment:
| Q |
166 |
atctcattctacatattctttgacaggatttgtcacattgtactaaaacagctttcaaaactctt |
230 |
Q |
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| T |
4600682 |
atctcattctacatattctttgacagaacctgtcacattgtactgaaacaactttcaaaactctt |
4600618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 4592380 - 4592329
Alignment:
| Q |
94 |
atatggccgagattacaacagtaggaaatgctgactgcaaatcatgacaggg |
145 |
Q |
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|||||||||||| ||| |||||||||||||||||| |||||||||||||||| |
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| T |
4592380 |
atatggccgagactaccacagtaggaaatgctgacagcaaatcatgacaggg |
4592329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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