View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_282 (Length: 248)
Name: NF11324A_low_282
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_282 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 55173885 - 55174102
Alignment:
| Q |
22 |
acggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaagttgaactgcataacgtt |
121 |
Q |
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| T |
55173885 |
acggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaaattgaactgcataacgtt |
55173984 |
T |
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| Q |
122 |
tgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctca |
221 |
Q |
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| T |
55173985 |
tgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctca |
55174084 |
T |
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| Q |
222 |
tgagcgttccaaaacacg |
239 |
Q |
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| T |
55174085 |
tgagcgttccaaaacacg |
55174102 |
T |
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