View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_283 (Length: 248)
Name: NF11324A_low_283
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_283 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 45609050 - 45609263
Alignment:
| Q |
32 |
agaacattatggacaatatgcactttatttatagaagaaaagaaaaatcaagaggagtttatgacaactggatttcagtgtccaacaactcttttaacac |
131 |
Q |
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| T |
45609050 |
agaacattatggacaatatgctctttatttatagaagaaaagaaaaatcaagaggagtttatgacaactggatttcactgtccaacaactcttttaacac |
45609149 |
T |
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| Q |
132 |
ttagtagccaaacatctcaacatctttaaatacaagatgaattgaaggatcaaagtaagagtttgaaaaccaaaaatattcttattgagtgaaatcttca |
231 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45609150 |
ttggtcgccaaacatctcaacatctttaaatacaagatgaattgaaggatcaaagcaagagtttgaaaaccaaaaatattcatattgagtgaaatcttca |
45609249 |
T |
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| Q |
232 |
ctaaacataaactc |
245 |
Q |
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|||||||||||||| |
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| T |
45609250 |
ctaaacataaactc |
45609263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 24565057 - 24564865
Alignment:
| Q |
43 |
gacaatatgcactttatttatagaagaaaagaaaaatcaagaggagtttatgacaactggatttcagtgtccaacaactcttttaacacttagtagccaa |
142 |
Q |
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| T |
24565057 |
gacagtatgcgctttatttttagaagaaaagagaaatcaagaggagcttatgacagttggatttcgatgt------acccttt--acacttggtctccaa |
24564966 |
T |
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| Q |
143 |
acatctcaacatctttaaatacaagatgaattgaaggatcaaagtaagagtttgaaaaccaaaaatattctta-ttgagtgaaatcttcactaaacataa |
241 |
Q |
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| T |
24564965 |
gcctctctacatctatagatacaagaggaactgaaggatcaaaacaagagtttgaaaaccaaaattattctcacttgaatgaaatcttcactacacataa |
24564866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 35728421 - 35728365
Alignment:
| Q |
32 |
agaacattatggacaatatgcactttatttatagaagaaaagaaaaatcaagaggag |
88 |
Q |
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||||||| |||||||| ||||||||||||| ||||||||| || ||||||| ||||| |
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| T |
35728421 |
agaacatcatggacaaaatgcactttatttttagaagaaaggagaaatcaaaaggag |
35728365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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