View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_289 (Length: 247)
Name: NF11324A_low_289
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_289 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 49986145 - 49986284
Alignment:
| Q |
102 |
tctccagtccacgcattcatgcaataaacacattagtggcatttggatagggattggacggtgcaaaaagaaatcatattttgattttattactcttaaa |
201 |
Q |
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| T |
49986145 |
tctccagtccacgcattcatgcaataaacacattagtggcatttggatagggattggacggtgcaaaaagaaatcatattttgattttattactcttaaa |
49986244 |
T |
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| Q |
202 |
tgccaagcttgagatctgcaccatgccaccatccaatctc |
241 |
Q |
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| T |
49986245 |
tgccaagcttgagatctgcaccatgccaccatccaatctc |
49986284 |
T |
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Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 49986003 - 49986096
Alignment:
| Q |
11 |
cagagatatcaaaataaaacatgctgccttgtattattttgtctcctgtcaaatgctagtgttacatcttcactttccttggccctcactttct |
104 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49986003 |
cagagatatcaaaataaaacatgctgccttgtagcattttgtctgctgtcaaatgctagtgttacatcttcactttccttggccctcactttct |
49986096 |
T |
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