View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_3 (Length: 581)

Name: NF11324A_low_3
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_3
NF11324A_low_3
[»] chr5 (21 HSPs)
chr5 (7-578)||(13341157-13341714)
chr5 (84-186)||(15446403-15446506)
chr5 (89-248)||(41427615-41427774)
chr5 (128-247)||(43005634-43005753)
chr5 (89-249)||(16417173-16417331)
chr5 (91-153)||(30804134-30804194)
chr5 (102-161)||(13348761-13348818)
chr5 (89-148)||(22984675-22984734)
chr5 (84-161)||(9996830-9996908)
chr5 (131-247)||(27339962-27340078)
chr5 (112-187)||(30799616-30799693)
chr5 (84-116)||(19579147-19579179)
chr5 (10-81)||(13349509-13349580)
chr5 (84-115)||(18843919-18843950)
chr5 (84-115)||(20321147-20321178)
chr5 (87-116)||(41688559-41688588)
chr5 (88-117)||(43235076-43235105)
chr5 (197-249)||(18051306-18051358)
chr5 (87-115)||(23172322-23172350)
chr5 (219-247)||(26021637-26021665)
chr5 (84-128)||(27340003-27340047)
[»] chr6 (29 HSPs)
chr6 (84-248)||(33592925-33593088)
chr6 (89-248)||(27890582-27890741)
chr6 (84-193)||(20432421-20432531)
chr6 (84-249)||(22498213-22498365)
chr6 (88-153)||(28669498-28669563)
chr6 (131-247)||(30912181-30912297)
chr6 (84-194)||(4596680-4596792)
chr6 (8-85)||(33593134-33593213)
chr6 (89-150)||(31108351-31108412)
chr6 (89-161)||(31407505-31407577)
chr6 (115-244)||(1179047-1179177)
chr6 (113-247)||(7621749-7621884)
chr6 (84-250)||(19748537-19748690)
chr6 (131-248)||(23898049-23898165)
chr6 (11-82)||(31407378-31407451)
chr6 (128-248)||(11327336-11327456)
chr6 (84-248)||(17103399-17103550)
chr6 (84-115)||(7918244-7918275)
chr6 (84-115)||(17543624-17543655)
chr6 (197-248)||(21354979-21355030)
chr6 (84-115)||(26053190-26053221)
chr6 (84-115)||(26073243-26073274)
chr6 (138-191)||(2912091-2912145)
chr6 (28-82)||(7857093-7857149)
chr6 (57-85)||(645404-645432)
chr6 (87-115)||(3573794-3573822)
chr6 (92-128)||(20432409-20432445)
chr6 (84-128)||(23506111-23506155)
chr6 (88-116)||(27233192-27233220)
[»] chr2 (21 HSPs)
chr2 (107-249)||(19245803-19245945)
chr2 (89-248)||(974534-974694)
chr2 (87-250)||(21869093-21869256)
chr2 (89-240)||(20034004-20034155)
chr2 (132-247)||(8428461-8428576)
chr2 (89-186)||(34578085-34578183)
chr2 (131-247)||(16767023-16767140)
chr2 (89-189)||(27523928-27524029)
chr2 (103-248)||(27749283-27749428)
chr2 (91-128)||(19245865-19245902)
chr2 (128-248)||(20063958-20064078)
chr2 (131-247)||(25538920-25539036)
chr2 (84-128)||(8428491-8428535)
chr2 (7-84)||(19245663-19245742)
chr2 (131-248)||(13502448-13502564)
chr2 (92-153)||(19519586-19519647)
chr2 (84-161)||(24474025-24474102)
chr2 (8-85)||(26251593-26251673)
chr2 (159-247)||(16767189-16767277)
chr2 (84-116)||(31237869-31237901)
chr2 (84-116)||(34841785-34841817)
[»] chr7 (24 HSPs)
chr7 (88-246)||(4574925-4575083)
chr7 (131-248)||(39182394-39182511)
chr7 (131-247)||(22687042-22687158)
chr7 (89-248)||(1981099-1981256)
chr7 (89-148)||(7307206-7307265)
chr7 (89-248)||(25842505-25842664)
chr7 (93-148)||(8629602-8629657)
chr7 (127-193)||(21157521-21157588)
chr7 (89-189)||(8304282-8304383)
chr7 (131-247)||(14055495-14055610)
chr7 (131-247)||(14365523-14365638)
chr7 (85-117)||(5058734-5058766)
chr7 (176-248)||(10285677-10285748)
chr7 (84-116)||(17811552-17811584)
chr7 (131-250)||(21846218-21846338)
chr7 (84-115)||(24725366-24725397)
chr7 (131-193)||(26565376-26565439)
chr7 (131-192)||(8329873-8329935)
chr7 (88-150)||(26340244-26340306)
chr7 (131-191)||(8329809-8329870)
chr7 (88-117)||(26617369-26617398)
chr7 (145-249)||(48621428-48621532)
chr7 (159-247)||(5058795-5058882)
chr7 (92-128)||(17809008-17809044)
[»] chr4 (36 HSPs)
chr4 (131-248)||(7452744-7452860)
chr4 (89-248)||(55476184-55476343)
chr4 (138-251)||(8889462-8889574)
chr4 (128-248)||(10394845-10394965)
chr4 (83-161)||(5845971-5846050)
chr4 (138-248)||(6346729-6346839)
chr4 (89-189)||(8367398-8367499)
chr4 (181-249)||(27528123-27528191)
chr4 (135-240)||(4157269-4157377)
chr4 (135-240)||(4157556-4157664)
chr4 (84-161)||(5884141-5884218)
chr4 (7-85)||(8743748-8743828)
chr4 (131-247)||(17466317-17466433)
chr4 (7-85)||(20812607-20812687)
chr4 (131-191)||(37240477-37240538)
chr4 (131-248)||(24719813-24719923)
chr4 (136-194)||(5943086-5943145)
chr4 (128-246)||(23064737-23064855)
chr4 (131-191)||(5361795-5361856)
chr4 (89-126)||(10394884-10394921)
chr4 (203-248)||(15982742-15982787)
chr4 (93-161)||(8743626-8743694)
chr4 (84-115)||(6346849-6346880)
chr4 (131-245)||(10143138-10143250)
chr4 (89-140)||(18403737-18403788)
chr4 (118-248)||(18459405-18459535)
chr4 (84-115)||(36121027-36121058)
chr4 (135-248)||(7045186-7045299)
chr4 (84-126)||(7045213-7045255)
chr4 (85-115)||(9911305-9911335)
chr4 (84-169)||(20812734-20812820)
chr4 (117-150)||(8020578-8020611)
chr4 (84-129)||(10143169-10143214)
chr4 (87-115)||(8011030-8011058)
chr4 (87-115)||(8889433-8889461)
chr4 (87-115)||(9770319-9770347)
[»] chr3 (31 HSPs)
chr3 (91-249)||(8592172-8592330)
chr3 (89-248)||(27090645-27090797)
chr3 (131-247)||(10872490-10872606)
chr3 (131-249)||(27676674-27676792)
chr3 (131-252)||(13286182-13286303)
chr3 (140-249)||(41671426-41671535)
chr3 (87-248)||(8560231-8560392)
chr3 (84-146)||(26208254-26208316)
chr3 (131-251)||(6136340-6136460)
chr3 (131-247)||(17064545-17064661)
chr3 (89-240)||(3041419-3041570)
chr3 (159-243)||(13006092-13006174)
chr3 (131-248)||(42697086-42697202)
chr3 (131-248)||(3449084-3449201)
chr3 (133-246)||(17796805-17796918)
chr3 (133-246)||(19105245-19105358)
chr3 (131-248)||(25870096-25870213)
chr3 (89-189)||(18014187-18014288)
chr3 (89-150)||(21553764-21553825)
chr3 (89-189)||(22971005-22971106)
chr3 (91-126)||(6136387-6136422)
chr3 (84-115)||(20756226-20756257)
chr3 (84-115)||(25870216-25870247)
chr3 (84-115)||(28745980-28746011)
chr3 (84-115)||(39428107-39428138)
chr3 (197-247)||(6860986-6861036)
chr3 (131-248)||(28136000-28136117)
chr3 (191-248)||(15806222-15806279)
chr3 (89-150)||(19348749-19348810)
chr3 (92-129)||(52519848-52519885)
chr3 (84-112)||(29067481-29067509)
[»] chr8 (28 HSPs)
chr8 (138-248)||(29384086-29384196)
chr8 (131-248)||(22909978-22910094)
chr8 (89-238)||(2040315-2040464)
chr8 (131-248)||(6811057-6811174)
chr8 (131-248)||(15761132-15761249)
chr8 (84-206)||(26574933-26575048)
chr8 (84-247)||(17647201-17647351)
chr8 (130-248)||(7489057-7489175)
chr8 (139-249)||(17566344-17566454)
chr8 (128-245)||(5922283-5922400)
chr8 (131-248)||(15231859-15231976)
chr8 (84-126)||(26879779-26879821)
chr8 (91-248)||(40541594-40541751)
chr8 (159-248)||(11879867-11879955)
chr8 (159-248)||(11897283-11897371)
chr8 (164-245)||(11973942-11974022)
chr8 (128-247)||(24414062-24414181)
chr8 (128-243)||(45403264-45403379)
chr8 (84-115)||(15294771-15294802)
chr8 (84-115)||(15475140-15475171)
chr8 (85-115)||(23142379-23142409)
chr8 (131-244)||(24056348-24056461)
chr8 (84-117)||(3094248-3094281)
chr8 (87-116)||(7489176-7489205)
chr8 (89-189)||(16752219-16752320)
chr8 (84-116)||(11879804-11879836)
chr8 (84-116)||(11897220-11897252)
chr8 (41-81)||(26575098-26575138)
[»] scaffold0028 (1 HSPs)
scaffold0028 (110-247)||(145805-145942)
[»] scaffold0001 (1 HSPs)
scaffold0001 (89-192)||(142825-142929)
[»] chr1 (20 HSPs)
chr1 (87-222)||(39845055-39845190)
chr1 (131-245)||(32881558-32881672)
chr1 (118-248)||(16434734-16434864)
chr1 (131-250)||(13100428-13100547)
chr1 (128-247)||(14074258-14074377)
chr1 (91-150)||(12002731-12002790)
chr1 (84-193)||(21242855-21242966)
chr1 (131-248)||(41032547-41032664)
chr1 (133-189)||(17055751-17055808)
chr1 (121-245)||(17197306-17197430)
chr1 (84-115)||(18304705-18304736)
chr1 (84-115)||(23528860-23528891)
chr1 (130-248)||(25146542-25146660)
chr1 (85-115)||(16125349-16125379)
chr1 (87-117)||(17869642-17869672)
chr1 (128-189)||(23528891-23528953)
chr1 (86-115)||(13100294-13100323)
chr1 (131-191)||(47786096-47786157)
chr1 (84-128)||(16434778-16434822)
chr1 (84-128)||(25146584-25146628)
[»] scaffold0016 (1 HSPs)
scaffold0016 (84-248)||(56199-56350)
[»] scaffold0186 (2 HSPs)
scaffold0186 (128-248)||(8676-8796)
scaffold0186 (84-115)||(8645-8676)
[»] scaffold0079 (1 HSPs)
scaffold0079 (89-189)||(14758-14859)
[»] scaffold0048 (2 HSPs)
scaffold0048 (131-247)||(61089-61205)
scaffold0048 (219-247)||(48445-48473)
[»] scaffold0017 (1 HSPs)
scaffold0017 (89-248)||(38301-38459)
[»] scaffold0534 (1 HSPs)
scaffold0534 (139-249)||(916-1026)
[»] scaffold0027 (1 HSPs)
scaffold0027 (91-189)||(132947-133046)
[»] scaffold0603 (2 HSPs)
scaffold0603 (131-240)||(8741-8850)
scaffold0603 (84-112)||(8856-8884)
[»] scaffold0182 (1 HSPs)
scaffold0182 (89-148)||(24582-24641)
[»] scaffold0259 (1 HSPs)
scaffold0259 (84-126)||(18588-18630)
[»] scaffold0150 (2 HSPs)
scaffold0150 (112-193)||(33157-33239)
scaffold0150 (89-123)||(33212-33246)
[»] scaffold1178 (1 HSPs)
scaffold1178 (118-150)||(621-653)
[»] scaffold0526 (1 HSPs)
scaffold0526 (89-145)||(8352-8408)
[»] scaffold0061 (1 HSPs)
scaffold0061 (118-150)||(76180-76212)


Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 578
Target Start/End: Complemental strand, 13341714 - 13341157
Alignment:
Q  7 aagaatatttggcatttaaactttgagtcatttat--ataagtatttagcggacttgaaactttgagtcatttatgactatccatcgattttgattgcga 104  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13341714 aagaatatttggcatttaaactttgagtcatttatgtataagtatttagcggacttgaaactttgagtcatttatgactatccatcgattttgattgcga 13341615  T
Q  105 ttttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaatccttcaatttcgtttgcgattttacgatttttcaatttttct 204  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13341614 ttttaaaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaatccttcaatttcgtttgcgattttacgatttttcaatttttct 13341515  T
Q  205 ataccctttcgatttgaagcaaaatcccgattttgacaaccttgcctacatttcaagctcctatagaaattcctcacatggagattcctctgatggagaa 304  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13341514 attccctttcgatttgaagcaaaatcccgattttgacaaccttgcctacatttcaagctcctatagaaattcctcacatggagattcctctgatggagaa 13341415  T
Q  305 ctcaactatggaaccttatcatggaatgactccatttggattggagaatccttat-aggcatgtgtctaaagctactgcatcttattggagaatccttct 403  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  13341414 ctc--ctatggaaccttatcatggaatgactccatttggattggagaatccttataaggcatgtgtctaaagctactgcatcttattggagaatccttgt 13341317  T
Q  404 gagaagggaagaatttaatatattgtctgtcgacactgatgtcttcgttcaagcctctataaagcgacatgatgatgttatctctacctagtcacagatt 503  Q
    ||  ||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||    
T  13341316 gattagggaagaatttaatatattgtctgtcgacactgatgt-------------------aagcgacatgatgatgttatctctacctagtcacagatt 13341236  T
Q  504 cagacaactcttgcacttattcttgaaaaactttccaaaccttagtttt----tgaattctgttttatgcgctttttga 578  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||||    
T  13341235 aagacaactcttgcacttattcttgaaaaactttccaaaccttagttttttaattaattctgttttatgcgctttttga 13341157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 15446403 - 15446506
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgat 182  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||| | |||||||||  ||||| ||| |||    
T  15446403 atccatcgattttgattgcgattttacgagtttcgattttgctatcttatatcgattctacaaaagtagtcgactaaaatccttcggtttcgattgtgat 15446502  T
Q  183 ttta 186  Q
    ||||    
T  15446503 ttta 15446506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 41427615 - 41427774
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||  |||||| ||||||||| |||| | ||||||||||||    
T  41427615 tcgattttgattgcaattttacaattccctattttgctatcctatatcgattctacaaaagtcctcgagtaaaatccttcgattttgattgcgattttac 41427714  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||  |  | ||||| |||  ||||||||| | |||| ||| || |||||||||||||||||    
T  41427715 ga-gtcccgattttgctactccctttcgactcgaagtaaagtctcgattttgacaaccttg 41427774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 43005753 - 43005634
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    |||||||||||||||||||||| ||| ||||||| || |||||||| | |||||||||||| |||||  |||||| ||||  ||||||||| | ||||||    
T  43005753 tcctatatcgattctacaaaagaagttgagtaaaatctttcaattttgattgcgattttacaattttcgaatttt-ctatttcctttcgatctaaagcaa 43005655  T
Q  227 aatcccgattttgacaacctt 247  Q
    |||||||||||||||||||||    
T  43005654 aatcccgattttgacaacctt 43005634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 16417173 - 16417331
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaatccttcaatttcgtttgcgattttacg 188  Q
    ||||||| |||||||||||||  |||||| ||| |||||||  | |||||| |||||||  || | |||||||  |||| |||||| ||||||||||| |    
T  16417173 tcgatttcgattgcgattttatgattttttattgtgctatctcaaatcgatcctacaaagttatttgagtaaaatcttcgatttcgattgcgattttatg 16417272  T
Q  189 atttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttgc 249  Q
    |||||   |||||  |||  |||||| |||||||||||||| | | |||||||||||||||    
T  16417273 atttt--gattttgttatctcctttcaatttgaagcaaaattctggttttgacaaccttgc 16417331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 30804134 - 30804194
Alignment:
Q  91 gattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagt 153  Q
    |||||| ||||||||||||| ||||| |||||||||  |||||||||||||||||||||||||    
T  30804134 gattttcattgcgattttaccattttcgattttgct--cctatatcgattctacaaaagtagt 30804194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 13348818 - 13348761
Alignment:
Q  102 cgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa 161  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||| |||| |||||||    
T  13348818 cgattttactatttttgattttgctatcctatat--attctacaaaactagttgagtaaa 13348761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 22984734 - 22984675
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaa 148  Q
    |||||||||||||  ||||||| || |  |||||||||||||||||||||||||||||||    
T  22984734 tcgattttgattggaattttacgatatgggattttgctatcctatatcgattctacaaaa 22984675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 9996908 - 9996830
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttga-ttttgctatcctatatcgattctacaaaagtagtcgagtaaa 161  Q
    ||||||||||||||||||  ||||||||| |||| | |||||||||| |||||  | ||||||||||||||| ||||||    
T  9996908 atccatcgattttgattgtaattttacaacttttcaattttgctatcttatattaactctacaaaagtagtcaagtaaa 9996830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 27340078 - 27339962
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||| |||||||||||||    ||||||| |||||| |||| | ||||||||| |||||||| | ||||| |||| ||||||| | |||||| ||| |    
T  27340078 tatatcaattctacaaaagtccgtgagtaaaatccttcgattttgattgcgatttcacgatttt-cgattttgctattccctttcaacttgaagtaaagt 27339980  T
Q  230 cccgattttgacaacctt 247  Q
     |||||||||||||||||    
T  27339979 tccgattttgacaacctt 27339962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 30799616 - 30799693
Alignment:
Q  112 atttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcg-tttgcgattttac 187  Q
    ||||| |||||| ||||| ||||||||||||||||||||||| | || ||||||||| |||||| ||| |||||||||    
T  30799616 attttcgatttttctatcatatatcgattctacaaaagtagttgtgtaaaatccttcgatttcgattttcgattttac 30799693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 19579147 - 19579179
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttt 116  Q
    |||||||||||||||||||||||||||||||||    
T  19579147 atccatcgattttgattgcgattttacaatttt 19579179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 13349580 - 13349509
Alignment:
Q  10 aatatttggcatttaaactttgagtcattta--tataagtatttagcggacttgaaactttgagtcatttatga 81  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||| | |||||| ||||  ||||||||||||||    
T  13349580 aatatttggcagttatactttgagtcatttatgtataagtattttgtggacttcaaac--tgagtcatttatga 13349509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 18843919 - 18843950
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  18843919 atccatcgattttgattgcgattttacaattt 18843950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 20321147 - 20321178
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  20321147 atccatcgattttgattgcgattttacaattt 20321178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 41688588 - 41688559
Alignment:
Q  87 catcgattttgattgcgattttacaatttt 116  Q
    ||||||||||||||||||||||||||||||    
T  41688588 catcgattttgattgcgattttacaatttt 41688559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 43235076 - 43235105
Alignment:
Q  88 atcgattttgattgcgattttacaattttt 117  Q
    ||||||||||||||||||||||||||||||    
T  43235076 atcgattttgattgcgattttacaattttt 43235105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 18051358 - 18051306
Alignment:
Q  197 atttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttgc 249  Q
    |||||||||| |||||||||  | ||| ||||||||||||||||| |||||||    
T  18051358 atttttctattccctttcgacctaaagtaaaatcccgattttgactaccttgc 18051306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 23172350 - 23172322
Alignment:
Q  87 catcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||    
T  23172350 catcgattttgattgcgattttacaattt 23172322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 26021637 - 26021665
Alignment:
Q  219 tgaagcaaaatcccgattttgacaacctt 247  Q
    |||||||||||||||||||||||||||||    
T  26021637 tgaagcaaaatcccgattttgacaacctt 26021665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 27340047 - 27340003
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctat 128  Q
    |||| ||||||||||||||||||| || ||||| |||||||||||    
T  27340047 atccttcgattttgattgcgatttcacgattttcgattttgctat 27340003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 84 - 248
Target Start/End: Complemental strand, 33593088 - 33592925
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaatccttcaatttcgtttgcgatt 183  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||| |||| |||    
T  33593088 atccatcgattttgattgcgattttatgatttttgattttgctatcctatatcaattctacaaaagtagttgagtaaatcattcgatttcgattgcaatt 33592989  T
Q  184 ttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    |||||| |||||||||||  ||| |||||||||| ||||||||||||||||||||||||| ||||    
T  33592988 ttacga-ttttcaattttgttattccctttcgatatgaagcaaaatcccgattttgacaatcttg 33592925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 27890582 - 27890741
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||  | |||| |||||||||||||| | || |||||||||    
T  27890582 tcgattttgattgcgattttacgagtcctgattttgctatcctatatcgattctacaaaagtccttgagtaaaatccttcaattttgattacgattttac 27890681  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||  || ||||||| |||  ||||||| | |||||| ||| || ||| |||||||||||||    
T  27890682 ga-gttccaattttactactccctttcaacttgaagtaaagtctcgaatttgacaaccttg 27890741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 20432531 - 20432421
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgat 182  Q
    ||||||||||||||||||||| ||||| ||||| |||||| ||| |||||||||||||||||||| ||||  ||| |||| ||||||||| | |||||||    
T  20432531 atccatcgattttgattgcgaatttacgattttggattttcctaccctatatcgattctacaaaactagttaagtaaaattcttcaattttgattgcgat 20432432  T
Q  183 tttacgatttt 193  Q
    |||||||||||    
T  20432431 tttacgatttt 20432421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 22498365 - 22498213
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgat 182  Q
    |||||||||||||||||||||||||||||||             |||||||||||||||||||||||  | |||| ||||| |||||||| | |||||||    
T  22498365 atccatcgattttgattgcgattttacaatt-------------tcctatatcgattctacaaaagtctttgagtaaaatcgttcaattttgattgcgat 22498279  T
Q  183 tttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttgc 249  Q
    |||||||  |  ||||||| |||| |||||||||  ||||| ||| |||| ||||||||||||||||    
T  22498278 tttacga-gtcccaattttgctattccctttcgacctgaagtaaagtcccaattttgacaaccttgc 22498213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 28669498 - 28669563
Alignment:
Q  88 atcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagt 153  Q
    ||||||||| ||||||||||||| ||||| |||||| |||||||| ||||||||||||||| ||||    
T  28669498 atcgattttaattgcgattttacgattttcgattttactatcctacatcgattctacaaaaatagt 28669563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 30912297 - 30912181
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||| |||||||||||| || |||| ||||||||||| | ||| |||||||||||| | | ||||| |||| | ||||| |  |||||||||||    
T  30912297 tatatcgattttacaaaagtagttgaataaaatccttcaattttggttgagattttacgattat-cgattttgctattctctttcaacctgaagcaaaat 30912199  T
Q  230 cccgattttgacaacctt 247  Q
     |||||||||||||||||    
T  30912198 tccgattttgacaacctt 30912181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 4596792 - 4596680
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttg-attttgctatcctatatcgattctacaaaagtagtcgagta-aatccttcaatttcgtttgcga 181  Q
    ||||| ||||||| ||||||||||||| ||||| |  ||| ||||||||||||| |||||| ||||||| | ||||| ||||||||||||| | |||| |    
T  4596792 atccaccgatttttattgcgattttacgattttcgtgtttcgctatcctatatcaattctagaaaagtaattgagtagaatccttcaattttgattgcaa 4596693  T
Q  182 ttttacgattttt 194  Q
    |||||| ||||||    
T  4596692 ttttacaattttt 4596680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 33593213 - 33593134
Alignment:
Q  8 agaatatttggcatttaaactttgagtcattta--tataagtatttagcggacttgaaactttgagtcatttatgactat 85  Q
    |||||||||| ||||||| ||||||||||||||  ||||||||||| |  ||||||||||||||||||| | ||||||||    
T  33593213 agaatatttgacatttaagctttgagtcatttatgtataagtattttgtagacttgaaactttgagtcaataatgactat 33593134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 31108351 - 31108412
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagt 150  Q
    |||||||||||||||||||||| ||||  ||||||||||||||| ||| ||| |||||||||    
T  31108351 tcgattttgattgcgattttacgatttacgattttgctatcctacatctattgtacaaaagt 31108412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 31407505 - 31407577
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa 161  Q
    |||| |||||||| |||||||| |||||||||||||||| |||||||| ||  || ||||||||| |||||||    
T  31407505 tcgactttgattgtgattttacgatttttgattttgctaccctatatccataatataaaagtagttgagtaaa 31407577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 1179047 - 1179177
Alignment:
Q  115 tttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttca-atttcgtttgcgattttacgatttttcaatttttctataccctt 212  Q
    ||||| |||||||||||| || ||||||||||||||||| |||| |||||||||| |||| | |||||| |||| ||||||| || ||  |  |  ||||    
T  1179047 tttgactttgctatccta-attgattctacaaaagtagttgagtaaaatccttcagattttgattgcgactttaggatttttgaaattgccattcacctt 1179145  T
Q  213 tcgatttgaagcaaaatcccgattttgacaac 244  Q
    || |  ||||||||||||||||||||||||||    
T  1179146 tcaacctgaagcaaaatcccgattttgacaac 1179177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 7621884 - 7621749
Alignment:
Q  113 tttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccct 211  Q
    |||| |||||||||||| |||||  |||||||||||||||| |||| |||| ||||||||| | |  |  ||||| |||||||| |||||  ||| ||||    
T  7621884 ttttcgattttgctatcatatattaattctacaaaagtagttgagtaaaattcttcaattttgataacagttttatgatttttcgattttgttattccct 7621785  T
Q  212 ttcgatttgaagcaaaatcccgattttgacaacctt 247  Q
    ||||||   ||| |||||| |||| |||||||||||    
T  7621784 ttcgatcgtaagtaaaatctcgatcttgacaacctt 7621749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 19748537 - 19748690
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgat 182  Q
    |||||||||||||||||||||||||||||||             |||||||||||||||||||||||  | |||| ||||||||| |||| | |||||||    
T  19748537 atccatcgattttgattgcgattttacaatt-------------tcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgat 19748623  T
Q  183 tttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttgcc 250  Q
    |||||||  |  | ||||| |||| ||||||| |  ||||  ||| ||||||||||||||||||||||    
T  19748624 tttacga-atcccgattttgctattccctttcaacctgaattaaagtcccgattttgacaaccttgcc 19748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 23898049 - 23898165
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||| ||||| ||||||| |||||| |||| | || ||||||||||||| | | ||||| || | | | |||||  |||||||||||    
T  23898049 tatatcgattctacaaa-gtagttgagtaaaatccttcgattttggtttcgattttacgattgt-cgattttgctcttctcattcgacctgaagcaaaat 23898146  T
Q  230 cccgattttgacaaccttg 248  Q
    |||||||||||||| ||||    
T  23898147 cccgattttgacaatcttg 23898165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 31407378 - 31407451
Alignment:
Q  11 atatttggcatttaaactttgagtcatttat--ataagtatttagcggacttgaaactttgagtcatttatgac 82  Q
    ||||||||||| || ||||| ||||||||||  |||||||||| | ||| || |||||||||||||||||||||    
T  31407378 atatttggcatctagacttttagtcatttatgtataagtattttgtggaatttaaactttgagtcatttatgac 31407451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 11327456 - 11327336
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    |||||||||||||||||||||||  | |||| |||| |||| |||| | ||||||||||||||  | || ||||| |||| ||||||| |  ||||| ||    
T  11327456 tcctatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacga-gtctcgattttgctattccctttcaacctgaagtaa 11327358  T
Q  227 aatcccgattttgacaaccttg 248  Q
    |  |||||||||||||||||||    
T  11327357 agccccgattttgacaaccttg 11327336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 17103399 - 17103550
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgat 182  Q
    |||||||||||||||||||||||||||||||             |||||||||||||||||||||||  | |||| |||||||||  | | | |||||||    
T  17103399 atccatcgattttgattgcgattttacaatt-------------tcctatatcgattctacaaaagtccttgagtaaaatccttcggtattgattgcgat 17103485  T
Q  183 tttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||||||| |  |  |||||  ||| ||||||||| |||||| ||| ||||||||||||||||||||    
T  17103486 tttacgagtcct-gattttgttattccctttcgacttgaagtaaagtcccgattttgacaaccttg 17103550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 7918275 - 7918244
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  7918275 atccatcgattttgattgcgattttacaattt 7918244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 17543655 - 17543624
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  17543655 atccatcgattttgattgcgattttacaattt 17543624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 21354979 - 21355030
Alignment:
Q  197 atttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    |||||||||| ||||||| | |||||| |||||||| |||||||||||||||    
T  21354979 atttttctattccctttcaacttgaagtaaaatcccaattttgacaaccttg 21355030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 26053221 - 26053190
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  26053221 atccatcgattttgattgcgattttacaattt 26053190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 26073274 - 26073243
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  26073274 atccatcgattttgattgcgattttacaattt 26073243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 2912145 - 2912091
Alignment:
Q  138 attctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatt 191  Q
    |||||||||||||||| ||||||| ||||||||||||| ||  ||||||||||||    
T  2912145 attctacaaaagtagttgagtaaaatccttcaatttcgattatgattttacgatt 2912091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 7857093 - 7857149
Alignment:
Q  28 tttgagtcatttat--ataagtatttagcggacttgaaactttgagtcatttatgac 82  Q
    ||||||||||||||  |||||||||| | |||| | |||||||||||||||||||||    
T  7857093 tttgagtcatttatgtataagtattttgtggacctcaaactttgagtcatttatgac 7857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 645404 - 645432
Alignment:
Q  57 acttgaaactttgagtcatttatgactat 85  Q
    |||||||||||||||||||||||||||||    
T  645404 acttgaaactttgagtcatttatgactat 645432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 3573822 - 3573794
Alignment:
Q  87 catcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||    
T  3573822 catcgattttgattgcgattttacaattt 3573794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 20432445 - 20432409
Alignment:
Q  92 attttgattgcgattttacaatttttgattttgctat 128  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  20432445 attttgattgcgattttacgattttcgattttgctat 20432409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 23506111 - 23506155
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctat 128  Q
    |||| |||||||| |||| |||||||||||||| |||||||||||    
T  23506111 atccttcgattttaattgtgattttacaattttcgattttgctat 23506155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 27233220 - 27233192
Alignment:
Q  88 atcgattttgattgcgattttacaatttt 116  Q
    |||||||||||||||||||||||||||||    
T  27233220 atcgattttgattgcgattttacaatttt 27233192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 19245803 - 19245945
Alignment:
Q  107 ttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttcta 205  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||  |||||| |||||  |||| | ||||||||||||||||||| | |||| |||    
T  19245803 ttacgattttcgattttactatcctatatcgattctacaaaagtagttaagtaaaatccttagattttgattgcgattttacgatttttga-ttttgcta 19245901  T
Q  206 taccctttcgatttgaagcaaaatcccgattttgacaaccttgc 249  Q
    | ||||||| | ||||||||||||||||||||||||||||||||    
T  19245902 ttccctttcaacttgaagcaaaatcccgattttgacaaccttgc 19245945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 974534 - 974694
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | |   || || |||||||||||||||||||||||||||  | ||||||| |||||| |||| | ||||||||||||    
T  974534 tcgattttgattgcgattttacgagtcccgacttcgctatcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 974633  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    || ||| | ||||| |||  ||||||||| |||||| ||| ||||||| |||| |||||||    
T  974634 gagtttccgattttgctactccctttcgacttgaagtaaagtcccgatattgataaccttg 974694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 21869256 - 21869093
Alignment:
Q  87 catcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgatttt 185  Q
    ||||||||||||||| |||||||| | | | |||||||||||| ||||||||||||||||||||  | || | ||||||||| ||||   ||||||||||    
T  21869256 catcgattttgattgggattttacgagtctcgattttgctatcatatatcgattctacaaaagtcattgaataaaatccttcgattttaattgcgatttt 21869157  T
Q  186 acgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttgcc 250  Q
    | ||  |  | |||||||||| ||||||||| |||||| ||| ||||||||||||| ||||||||    
T  21869156 aaga-gtcccgatttttctattccctttcgacttgaagtaaagtcccgattttgacgaccttgcc 21869093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 20034155 - 20034004
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | |   || |||||||| ||| |||||||||||||||||  | ||||||| ||||||||||| | ||||||||||||    
T  20034155 tcgattttgattgcgattttacgagtcccgactttgctattctacatcgattctacaaaagtccttgagtaaaatccttcaattttgattgcgattttac 20034056  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttga 240  Q
    ||  | || ||||| |||  ||||||||| |||||| ||| ||||||||||||    
T  20034055 ga-gtctcgattttgctactccctttcgacttgaagtaaagtcccgattttga 20034004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 8428461 - 8428576
Alignment:
Q  132 atatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatc 230  Q
    |||| |||||||||||| |||| ||| ||| |||||| |||| | |||||||||||  |||||| | ||||||||| |||||||||  | ||||||||||    
T  8428461 atattgattctacaaaaatagttgagcaaaatccttcgattttgattgcgattttagaatttttga-tttttctattccctttcgacctaaagcaaaatc 8428559  T
Q  231 ccgattttgacaacctt 247  Q
    |||||||||||||||||    
T  8428560 ccgattttgacaacctt 8428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 34578085 - 34578183
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgatttta 186  Q
    |||||||||||||||||||||| | |   ||||||||||||||| |||||||||||||||||    |||| |||||||||||||| | |||||||||||    
T  34578085 tcgattttgattgcgattttacgagtcccgattttgctatcctacatcgattctacaaaagtccatgagtaaaatccttcaattttgattgcgatttta 34578183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 16767023 - 16767140
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| | ||||||||||| |||||||| ||||| || | || ||| ||  |||||||||||    
T  16767023 tatatcgattctataaaagtagttgagtaaaatccttcaattttgattgcgattttatgatttttcgattttgctcttcctttttgacctgaagcaaaat 16767122  T
Q  230 cccgattttgacaacctt 247  Q
     || || |||| ||||||    
T  16767123 tccaatgttgaaaacctt 16767140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 27524029 - 27523928
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||| ||||||| | |   || |||||||||||| |||||||||||||||||  | |||| ||||||||| |||| | ||||||||||||    
T  27524029 tcgattttgattgcaattttacgagtcccgactttgctatcctacatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 27523930  T
Q  188 ga 189  Q
    ||    
T  27523929 ga 27523928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 27749428 - 27749283
Alignment:
Q  103 gattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttt 201  Q
    |||||||| ||||  | ||| |||||| ||| |||||||||||||| |  | ||||||| || |||||||| | ||||||||||||||||| ||| ||||    
T  27749428 gattttacgatttgcgttttggctatcgtatttcgattctacaaaaatccttgagtaaactcattcaatttagattgcgattttacgatttgtca-tttt 27749330  T
Q  202 tctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
     |||   ||||||||| ||||| ||||| | ||||||||||| ||||    
T  27749329 actaattcctttcgatctgaagtaaaatactgattttgacaaacttg 27749283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 19245865 - 19245902
Alignment:
Q  91 gattttgattgcgattttacaatttttgattttgctat 128  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19245865 gattttgattgcgattttacgatttttgattttgctat 19245902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 20063958 - 20064078
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    |||||||||||||||||||||||  | |||| |||| |||| |||| | ||||||||||||||  | || ||||| |||| ||||||| |  ||||| ||    
T  20063958 tcctatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttacga-gtctcgattttgctattccctttcaacctgaagtaa 20064056  T
Q  227 aatcccgattttgacaaccttg 248  Q
    |  |||||||||||||||||||    
T  20064057 agccccgattttgacaaccttg 20064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 25539036 - 25538920
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||||||||||||||||  ||| |||||||| ||||| | ||||||||||||||     | |||||||||| |||||||||  ||| | ||| |    
T  25539036 tatatcgattctacaaaagtagttcagtaaaatcctttaattttgattgcgattttacga-gacccgatttttctattccctttcgacctgatgtaaagt 25538938  T
Q  230 cccgattttgacaacctt 247  Q
     |||||||||||||||||    
T  25538937 accgattttgacaacctt 25538920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 8428491 - 8428535
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctat 128  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||    
T  8428491 atccttcgattttgattgcgattttagaatttttgatttttctat 8428535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 19245663 - 19245742
Alignment:
Q  7 aagaatatttggcatttaaactttgagtcatttat--ataagtatttagcggacttgaaactttgagtcatttatgacta 84  Q
    |||||| ||||| || ||| |||| ||||||||||  | |||||||| | |||||| |||||||||||||||||||||||    
T  19245663 aagaatttttggtatctaagcttttagtcatttatgcaaaagtattttgtggactttaaactttgagtcatttatgacta 19245742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 13502564 - 13502448
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaa-atccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||| |||||||||||| |||| || ||| |||||||||||| | || ||||||||||| ||||| ||||| || | ||||||| | ||||| ||||||    
T  13502564 tatatagattctacaaaaatagttgactaatatccttcaattttgattacgattttacga-ttttcgattttactcttccctttccacttgaaacaaaat 13502466  T
Q  230 cccgattttgacaaccttg 248  Q
      | |||||||||||||||    
T  13502465 -tcaattttgacaaccttg 13502448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 19519586 - 19519647
Alignment:
Q  92 attttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagt 153  Q
    ||||||||||||||||||| |||||  |||||| |||| |||||||||| | ||||| ||||    
T  19519586 attttgattgcgattttacgattttcaattttgttatcatatatcgattttgcaaaaatagt 19519647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 24474025 - 24474102
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa 161  Q
    ||||| ||||||| |||| ||||||||||||||  |||||  |||| ||||| ||||  ||||||||||| |||||||    
T  24474025 atccaacgattttaattgtgattttacaattttcaattttattatcttatattgattaaacaaaagtagttgagtaaa 24474102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 26251593 - 26251673
Alignment:
Q  8 agaatatttggcatttaaactttgagtcatttat--ataagtatttagcggacttgaaacttt-gagtcatttatgactat 85  Q
    ||||||||||  || || ||||||||| ||||||  ||| |||||| | |||||||||||||| |||||||||||||||||    
T  26251593 agaatatttgatatctagactttgagtaatttatttataggtattttgtggacttgaaacttttgagtcatttatgactat 26251673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 16767189 - 16767277
Alignment:
Q  159 aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaacctt 247  Q
    |||||||||||||| | ||||||||||| |||||||| ||||| || | || ||| ||  ||||||||||| || || |||| ||||||    
T  16767189 aaatccttcaattttgattgcgattttatgatttttcgattttgctcttcctttttgacctgaagcaaaattccaatgttgaaaacctt 16767277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 31237901 - 31237869
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttt 116  Q
    ||||||||||||||||||| |||||||||||||    
T  31237901 atccatcgattttgattgcaattttacaatttt 31237869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 34841785 - 34841817
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttt 116  Q
    ||||||||||||||||||||||||||| |||||    
T  34841785 atccatcgattttgattgcgattttacgatttt 34841817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 4574925 - 4575083
Alignment:
Q  88 atcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagta-aatccttcaatttcgtttgcgatttta 186  Q
    ||||||||||| ||||||||||| |||||  ||||| ||||||||||||||||||||||||||||| ||||| ||| |||  |||| | |||||||||||    
T  4574925 atcgattttgactgcgattttacgattttcaattttactatcctatatcgattctacaaaagtagttgagtagaattctttgattttgattgcgatttta 4575024  T
Q  187 cgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaacct 246  Q
    ||||||||  ||||| |||| ||||||| |  ||||| |||||| | |||||||||||||    
T  4575025 cgattttt-gattttactattccctttcaacctgaagaaaaatctcaattttgacaacct 4575083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 39182394 - 39182511
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||||| |||| ||||||||| |||| | |||||||||||||| || || |||||||| | | |||| ||  |||||||||||    
T  39182394 tatatcgattctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacga-ttgtcgatttttctcttctctttggaactgaagcaaaat 39182492  T
Q  230 cccgattttgacaaccttg 248  Q
    | |||||||||||||||||    
T  39182493 cacgattttgacaaccttg 39182511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 22687158 - 22687042
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||||| ||||||| | ||||||||| | ||| |||||||||||| | | ||||| || | | |||||||| |||||||||||    
T  22687158 tatatcgattctacaaaagtagttgagtaaaattcttcaattttggttgtgattttacgattct-cgattttgctcttctctttcgatctgaagcaaaat 22687060  T
Q  230 cccgattttgacaacctt 247  Q
    ||||||||| ||||||||    
T  22687059 cccgattttaacaacctt 22687042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 1981256 - 1981099
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaatccttcaatttcgtttgcgattttacg 188  Q
    |||||||||||||| ||||||| | |   || |||||||||||||||||||||||| ||||   | |||||| |||||| |||| | || ||||||||||    
T  1981256 tcgattttgattgcaattttacgagtcccgactttgctatcctatatcgattctactaaagaccttgagtaa-tccttcgattttgattacgattttacg 1981158  T
Q  189 atttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    | ||  |||||||||||  ||||||||| |||||| ||| |||||||||||| |||||||    
T  1981157 agttc-caatttttctaatccctttcgacttgaagtaaagtcccgattttgataaccttg 1981099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 7307206 - 7307265
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaa 148  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  7307206 tcgattttgattgcgattttacgatttgcgattttgctatcctatatcgattctacaaaa 7307265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 25842664 - 25842505
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | |   || |||||||||||| |||||||||||||||||    |||| ||||||| |||||| | ||||||||||||    
T  25842664 tcgattttgattgcgattttacgagtcccgactttgctatcctacatcgattctacaaaagttcatgagtaaaatcctccaattttgattgcgattttac 25842565  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||  |  | ||||| |||  ||||||||| |||||| ||| |||| ||||||| |||||||    
T  25842564 ga-gtcccgattttgctactccctttcgacttgaagtaaagtcccaattttgataaccttg 25842505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 8629657 - 8629602
Alignment:
Q  93 ttttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaa 148  Q
    |||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||    
T  8629657 ttttgattgcgattttacgatttatgattttactatcctgtatcgattctacaaaa 8629602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 21157588 - 21157521
Alignment:
Q  127 atcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttt 193  Q
    ||||||||| ||||||||||||||||| || |||| ||||||||||| | ||| ||||||||||||||    
T  21157588 atcctatatagattctacaaaagtagttgaataaaatccttcaattttgattgagattttacgatttt 21157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 8304282 - 8304383
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||| ||||||  | ||   |||||||||||||||||| |||||||||||||  | |||| ||||||||| |||| | ||| ||||||||    
T  8304282 tcgattttgattgcaattttatgagttccaattttgctatcctatatcaattctacaaaagtccttgagtaaaatccttcgattttgattgtgattttac 8304381  T
Q  188 ga 189  Q
    ||    
T  8304382 ga 8304383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 14055495 - 14055610
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||| ||||||||||||||| |||| ||||||||| |||| | |||||||||||| | || || ||||| ||   | |||||||  |||||||||||    
T  14055495 tatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacca-ttgtcgattttgctcatctctttcgacctgaagcaaaat 14055593  T
Q  230 cccgattttgacaacctt 247  Q
     |||||||||||||||||    
T  14055594 -ccgattttgacaacctt 14055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 14365523 - 14365638
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||| ||||||||||||||| |||| ||||||||| |||| | |||||||||||| | || || ||||| ||   | |||||||  |||||||||||    
T  14365523 tatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacca-ttgtcgattttgctcatctctttcgacctgaagcaaaat 14365621  T
Q  230 cccgattttgacaacctt 247  Q
     |||||||||||||||||    
T  14365622 -ccgattttgacaacctt 14365638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 5058734 - 5058766
Alignment:
Q  85 tccatcgattttgattgcgattttacaattttt 117  Q
    |||||||||||||||||||||||||||||||||    
T  5058734 tccatcgattttgattgcgattttacaattttt 5058766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 10285748 - 10285677
Alignment:
Q  176 ttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    |||||||||||||||| || | ||||||| | | |||||||  ||||| ||||||||||||||||||||||||    
T  10285748 ttgcgattttacgattgttga-tttttctcttctctttcgacctgaagtaaaatcccgattttgacaaccttg 10285677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 17811552 - 17811584
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttt 116  Q
    |||||||||||||||||||||||||||||||||    
T  17811552 atccatcgattttgattgcgattttacaatttt 17811584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 21846338 - 21846218
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||| ||||||||| || |||| |||||| |||| | ||||||||||| |||||||  ||||| || | | |||||||  || ||||||||    
T  21846338 tatatcgattctataaaagtagttgattaaaatccttcgattttggttgcgattttaggattttt-gattttgctctcctctttcgacctg-agcaaaat 21846241  T
Q  230 cccg--attttgacaaccttgcc 250  Q
    ||||  |||||||||||||||||    
T  21846240 cccgatattttgacaaccttgcc 21846218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 24725397 - 24725366
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  24725397 atccatcgattttgattgcgattttacaattt 24725366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 26565439 - 26565376
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttt 193  Q
    ||||| ||||||||||||||||| |||| ||||||||| |||| | || |||||||||||||||    
T  26565439 tatattgattctacaaaagtagttgagtaaaatccttcgattttgattacgattttacgatttt 26565376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 8329935 - 8329873
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgattt 192  Q
    |||||| |||||||||||||||| |||| ||||||||  |||| | |||||||||||||||||    
T  8329935 tatatcaattctacaaaagtagttgagtaaaatcctttgattttgattgcgattttacgattt 8329873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 26340306 - 26340244
Alignment:
Q  88 atcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagt 150  Q
    |||||||||||||| |||||||| |||||  |||||  |||| ||||||||||||| ||||||    
T  26340306 atcgattttgattgtgattttacgattttcaatttttatatcttatatcgattctataaaagt 26340244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 8329870 - 8329809
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatt 191  Q
    |||||| |||||||||||||||| |||| |||||||||||||| | |||| |||||| ||||    
T  8329870 tatatcaattctacaaaagtagttgagtaaaatccttcaattttgattgcaattttatgatt 8329809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 26617398 - 26617369
Alignment:
Q  88 atcgattttgattgcgattttacaattttt 117  Q
    ||||||||||||||||||||||||||||||    
T  26617398 atcgattttgattgcgattttacaattttt 26617369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 48621532 - 48621428
Alignment:
Q  145 aaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaa 243  Q
    ||||||||| ||||||| || |||||||||  |||||||||||||| ||||| |||||  |||  ||||| ||||||||| |||||  | || |||||||    
T  48621532 aaaagtagttgagtaaaatctttcaatttcaattgcgattttacga-ttttcgattttgttatttcctttagatttgaagtaaaatttcaatgttgacaa 48621434  T
Q  244 ccttgc 249  Q
    ||||||    
T  48621433 ccttgc 48621428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 5058795 - 5058882
Alignment:
Q  159 aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaacctt 247  Q
    ||||||||| |||| | |||| ||||||||| ||  | ||||| |||| |||||| ||| ||||| ||| |||||||||||||||||||    
T  5058795 aaatccttcgattttgattgcaattttacgaattc-cgattttgctattcccttttgatctgaagtaaagtcccgattttgacaacctt 5058882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 17809044 - 17809008
Alignment:
Q  92 attttgattgcgattttacaatttttgattttgctat 128  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  17809044 attttgattgcgattttacgattttcgattttgctat 17809008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 7452744 - 7452860
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatc 230  Q
    ||||| ||||||||||||||||| ||||||||||||| |||| | |||||||||||||| ||||||| |||||| | |||||||||  ||||||||||||    
T  7452744 tatattgattctacaaaagtagttgagtaaatccttcgattttgattgcgattttacga-ttttcaacttttctcttccctttcgacctgaagcaaaatc 7452842  T
Q  231 ccgattttgacaaccttg 248  Q
    |  |||||||||||||||    
T  7452843 ctaattttgacaaccttg 7452860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 55476184 - 55476343
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | ||  || ||||||||| ||||||||||||||||||||  | |||| ||||||||| |||| | ||||||||||||    
T  55476184 tcgattttgattgcgattttacgagttccgactttgctatcttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 55476283  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||  |  | |||||  ||  ||||||||| |||||| ||| |||||||||||| |||||||    
T  55476284 ga-gtaccgattttattactccctttcgacttgaagtaaagtcccgattttgataaccttg 55476343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 8889462 - 8889574
Alignment:
Q  138 attctacaaaagtagtcgagtaa-atccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgatt 236  Q
    |||||||||||||||| |||||| ||||||| |||| | |||||||||||| ||| | ||||||| || | | |||||||  ||||||||||||||||||    
T  8889462 attctacaaaagtagttgagtaagatccttcgattttggttgcgattttacaattgt-caattttgctct-ctctttcgacctgaagcaaaatcccgatt 8889559  T
Q  237 ttgacaaccttgcct 251  Q
    |||||||||||||||    
T  8889560 ttgacaaccttgcct 8889574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 10394845 - 10394965
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    ||||||| |||||||||||||||||| ||||||| |||||| |||| | |||||||||||||||||||  ||||| || |  | |||| | |||||||||    
T  10394845 tcctataccgattctacaaaagtagttgagtaaagtccttcgattttgattgcgattttacgattttt-gattttgctctttcttttcaacttgaagcaa 10394943  T
Q  227 aatcccgattttgacaaccttg 248  Q
    ||| || |||||||||||||||    
T  10394944 aattccaattttgacaaccttg 10394965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 5846050 - 5845971
Alignment:
Q  83 tatccatcgattttgattg-cgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa 161  Q
    |||||||| |||||||||| ||||||||  |||||| ||||||||||||||||| |||||||||||| |||| |||||||    
T  5846050 tatccatctattttgattggcgattttatgattttttattttgctatcctatattgattctacaaaaatagttgagtaaa 5845971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 6346839 - 6346729
Alignment:
Q  138 attctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgatt 236  Q
    |||||||||||||||| ||||||| |||||| |||| | ||| |||||||||||||| | ||||| || | |||||||||  ||||||||| | ||||||    
T  6346839 attctacaaaagtagttgagtaaaatccttcgattttgattgtgattttacgatttt-cgattttgctcttccctttcgacctgaagcaaatttccgatt 6346741  T
Q  237 ttgacaaccttg 248  Q
    ||||||||||||    
T  6346740 ttgacaaccttg 6346729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 8367398 - 8367499
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||||  ||| |||||  | |||| ||||||||| |||| | |||| |||||||    
T  8367398 tcgattttaattgcaattttacaatttatgattttgctatcctatatcgatattaccaaagtccttgagtaaaatccttcgattttgattgcaattttac 8367497  T
Q  188 ga 189  Q
    ||    
T  8367498 ga 8367499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 27528123 - 27528191
Alignment:
Q  181 attttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttgc 249  Q
    ||||||||||||||| |||||  ||| |||||||||| ||||| |||||| ||||||||||||||||||    
T  27528123 attttacgatttttcgattttgttattccctttcgatatgaagtaaaatctcgattttgacaaccttgc 27528191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 4157269 - 4157377
Alignment:
Q  135 tcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgat--ttttcaatttttctataccctttcgatttgaagcaaaatcc 231  Q
    ||||||||||||||||||| ||||||| || ||| || | | |||||||||||| ||  ||||| ||||| || | ||||||||| || |||||||||||    
T  4157269 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttacaatgattttcgattttgctcttccctttcgacttaaagcaaaatcc 4157368  T
Q  232 cgattttga 240  Q
    |||||||||    
T  4157369 cgattttga 4157377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 4157556 - 4157664
Alignment:
Q  135 tcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgat--ttttcaatttttctataccctttcgatttgaagcaaaatcc 231  Q
    ||||||||||||||||||| ||||||| || ||| || | | |||||||||||| ||  ||||| ||||| || | ||||||||| || |||||||||||    
T  4157556 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttacaatgattttcgattttgctcttccctttcgacttaaagcaaaatcc 4157655  T
Q  232 cgattttga 240  Q
    |||||||||    
T  4157656 cgattttga 4157664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 5884218 - 5884141
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa 161  Q
    ||||||| |||||||||| |||||||  |||||  ||||| ||||||||||| |||||||||||| |||| |||||||    
T  5884218 atccatctattttgattgtgattttatgattttgaatttttctatcctatattgattctacaaaaatagttgagtaaa 5884141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 8743828 - 8743748
Alignment:
Q  7 aagaatatttggcatttaaactttgagtcatttatata--agtatttagcggacttgaaactttgagtcatttatgactat 85  Q
    ||||||||||| ||| ||| ||||||||||||||| ||  ||||||| |  ||||| ||||||||||||||||||||||||    
T  8743828 aagaatatttgacatctaagctttgagtcatttatgtacaagtattttgtagactttaaactttgagtcatttatgactat 8743748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 17466317 - 17466433
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagta-aatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||| ||||||||||| ||||| |||| |||||||| |||||| ||||||||| || || ||||| ||   | ||||||| ||||||||||||    
T  17466317 tatatcgattccacaaaagtagttgagtataatctttcaattttgtttgcaattttacga-ttgtcgattttgctcagctctttcgacttgaagcaaaat 17466415  T
Q  230 cccgattttgacaacctt 247  Q
     ||  |||||||||||||    
T  17466416 gccagttttgacaacctt 17466433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 20812607 - 20812687
Alignment:
Q  7 aagaatatttggcatttaaactttgagtcatttat--ataagtatttagcggacttgaaactttgagtcatttatgactat 85  Q
    ||||||||||| ||| ||  ||||| |||||||||  |||||||||| |  ||||||||||||||||||||||||||||||    
T  20812607 aagaatatttgacatatatgctttgtgtcatttatttataagtattttgtagacttgaaactttgagtcatttatgactat 20812687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 37240477 - 37240538
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatt 191  Q
    ||||||||||||||||||||||| |||| ||||||||| |||| | ||||||||||||||||    
T  37240477 tatatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacgatt 37240538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 24719813 - 24719923
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||| ||||||||| |||||| |||      | |||||  ||||||||| ||||| || | |||||||||  |||||||||||    
T  24719813 tatatcgattctacaaaagtaatcgagtaaaatccttcgatt------gtgattt--cgatttttcgattttgctcttccctttcgacctgaagcaaaat 24719904  T
Q  230 cccgattttgacaaccttg 248  Q
    | |||||||||||||||||    
T  24719905 ctcgattttgacaaccttg 24719923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 5943145 - 5943086
Alignment:
Q  136 cgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgattttt 194  Q
    |||||||||||||||||| ||||||| |||||||||||   |||||||||||||||||||    
T  5943145 cgattctacaaaagtagttgagtaaaatccttcaattttacttgcgattttacgattttt 5943086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 23064855 - 23064737
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    |||||||||||||||||||||||  | || |||| ||||||||||| | ||||||||||||||  || | ||||   ||| |||||||||  ||||| ||    
T  23064855 tcctatatcgattctacaaaagtccttgaataaaatccttcaattttgattgcgattttacga-gttccgatttcgttattccctttcgacctgaagtaa 23064757  T
Q  227 aatcccgattttgacaacct 246  Q
    | ||||||||||||||||||    
T  23064756 agtcccgattttgacaacct 23064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 5361856 - 5361795
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatt 191  Q
    ||||||||||||||||||||||| |||| ||| ||||| |||| |||||| |||||||||||    
T  5361856 tatatcgattctacaaaagtagttgagtaaaacccttcgattttgtttgcaattttacgatt 5361795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 10394884 - 10394921
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgct 126  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10394884 tcgattttgattgcgattttacgatttttgattttgct 10394921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 15982787 - 15982742
Alignment:
Q  203 ctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||    
T  15982787 ctatcccctttcgatctgaagcaaaatcccaattttgacaaccttg 15982742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 8743694 - 8743626
Alignment:
Q  93 ttttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa 161  Q
    |||| |||||||| |||| ||||| |||||| ||| |||||||||||| |||||| ||||| |||||||    
T  8743694 ttttaattgcgatattacgattttcgattttactagcctatatcgattatacaaatgtagttgagtaaa 8743626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 6346880 - 6346849
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  6346880 atccatcgattttgattgcgattttacaattt 6346849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 10143138 - 10143250
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||||||||||| |||| || |||| |||||| |||| | |||||||||||||||| || |||||| |||| | |||| ||||||||| |||||    
T  10143138 tatatcgattctacaaaattagttgaataaaatccttcgattttgattgcgattttacgattgtt-aattttgctat-ctcttttgatttgaag-aaaat 10143234  T
Q  230 cccgattttgacaacc 245  Q
    | | ||||||| ||||    
T  10143235 ctcaattttgataacc 10143250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 18403737 - 18403788
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgatt 140  Q
    |||||||||||||||||||||  |||| | |||||||||| |||||||||||    
T  18403737 tcgattttgattgcgattttattatttataattttgctatgctatatcgatt 18403788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 18459535 - 18459405
Alignment:
Q  118 gattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcga 216  Q
    ||||||| | || |||||| ||||||||||| ||||  ||| ||||||||| ||||   |||||||||||||||| | | ||||| || |  |||||| |    
T  18459535 gattttgatttcttatatcaattctacaaaattagttaagtcaaatccttcgattttaattgcgattttacgattgt-cgattttgctctttcctttcaa 18459437  T
Q  217 tttgaagcaaaatcccgattttgacaaccttg 248  Q
      |||||||||||| |||||||||||||||||    
T  18459436 cctgaagcaaaatctcgattttgacaaccttg 18459405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 36121027 - 36121058
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  36121027 atccatcgattttgattgcgattttacaattt 36121058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 7045186 - 7045299
Alignment:
Q  135 tcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccg 233  Q
    ||||||||  ||||| ||| ||||||| |||||| |||| | ||||||||||| ||||||| | |||| || | |||||||||  ||||| ||||| ||     
T  7045186 tcgattcttgaaaagcagttgagtaaaatccttcgattttgattgcgattttatgatttttga-ttttgctcttccctttcgacctgaagtaaaattcct 7045284  T
Q  234 attttgacaaccttg 248  Q
    |||||||||||||||    
T  7045285 attttgacaaccttg 7045299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 7045213 - 7045255
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgct 126  Q
    |||| |||||||||||||||||||||  |||||||||||||||    
T  7045213 atccttcgattttgattgcgattttatgatttttgattttgct 7045255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 9911335 - 9911305
Alignment:
Q  85 tccatcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||||    
T  9911335 tccatcgattttgattgcgattttacaattt 9911305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 20812734 - 20812820
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaa 169  Q
    |||| ||||| ||||||||||||||| ||||||  ||||||| ||||||| |  || ||||||||||| | |||| |||||||||||    
T  20812734 atccttcgatcttgattgcgattttaaaattttcaattttgccatcctatttatatcctacaaaagtaattgagtaaaatccttcaa 20812820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 8020611 - 8020578
Alignment:
Q  117 tgattttgctatcctatatcgattctacaaaagt 150  Q
    |||||||||||||||||||| |||||||||||||    
T  8020611 tgattttgctatcctatatctattctacaaaagt 8020578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 10143169 - 10143214
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatc 129  Q
    |||| |||||||||||||||||||||| ||| || |||||||||||    
T  10143169 atccttcgattttgattgcgattttacgattgttaattttgctatc 10143214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 8011058 - 8011030
Alignment:
Q  87 catcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||    
T  8011058 catcgattttgattgcgattttacaattt 8011030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 8889433 - 8889461
Alignment:
Q  87 catcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||    
T  8889433 catcgattttgattgcgattttacaattt 8889461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 9770319 - 9770347
Alignment:
Q  87 catcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||    
T  9770319 catcgattttgattgcgattttacaattt 9770347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 8592330 - 8592172
Alignment:
Q  91 gattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacga 189  Q
    |||||||||||||||||||| |     |||||||||||||||||||||||||||||||||  | |||| ||||||||| |||| | ||||||||||||||    
T  8592330 gattttgattgcgattttacgagacccgattttgctatcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 8592231  T
Q  190 tttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttgc 249  Q
      | || ||||| ||||  |||||||| |||||| ||| ||||||||| |||||||||||    
T  8592230 -gtctcgattttgctatttcctttcgacttgaagtaaagtcccgatttcgacaaccttgc 8592172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 27090645 - 27090797
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||| ||||||| |  | |||| ||||||||| ||||   ||||||| ||||    
T  27090645 tcgattttgattgcgattttac-------gattttgctatcctatatcgattatacaaaattccttgagtaaaatccttcgatttttattgcgatcttac 27090737  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    || ||| |||||||||||| |||||||||  | ||| |||||| |||||| ||||||||||    
T  27090738 ga-tttgcaatttttctattccctttcgacctaaagtaaaatctcgatttcgacaaccttg 27090797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 10872606 - 10872490
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||||| ||||||||||  |||||| ||||||||||| | ||||||||||| |||||||  |||||||| | |||||| ||  ||||| |||||    
T  10872606 tatatcgattcttcaaaagtagtttagtaaaatccttcaattttgattgcgattttatgattttt-gatttttctcttcccttttgacctgaagtaaaat 10872508  T
Q  230 cccgattttgacaacctt 247  Q
    || |||||||||||||||    
T  10872507 cctgattttgacaacctt 10872490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 27676674 - 27676792
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||| |||||||||||| ||||||| || ||| |||| | ||||||||||| |||||| | ||||| || | ||||||||| ||||||||||||    
T  27676674 tatatcgattttacaaaagtagttgagtaaaatctttcgattttgattgcgattttaagatttt-cgattttgctcttccctttcgacttgaagcaaaat 27676772  T
Q  230 cccgattttgacaaccttgc 249  Q
    || |||||| ||||| ||||    
T  27676773 cctgattttaacaactttgc 27676792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 13286182 - 13286303
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||||| |||| ||||| ||  |||| | |||||||||||||| ||||  |||||||| | ||||| |||  |||||||||||    
T  13286182 tatatcgattctacaaaagtagttgagtaaaatcttttgattttgattgcgattttacgagtttt-gatttttctcttcccttccgacctgaagcaaaat 13286280  T
Q  230 cccgattttgacaaccttgccta 252  Q
       ||||||||||||||||||||    
T  13286281 tgtgattttgacaaccttgccta 13286303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 41671426 - 41671535
Alignment:
Q  140 tctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgatttt 238  Q
    |||||||||||||| ||||||| |||||| |||| | |||||||||||| ||| | | ||||| || | | |||||||  ||||||||||||||||||||    
T  41671426 tctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacaattat-cgattttgctcttctctttcgacctgaagcaaaatcccgatttt 41671524  T
Q  239 gacaaccttgc 249  Q
    |||||||||||    
T  41671525 gacaaccttgc 41671535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 8560392 - 8560231
Alignment:
Q  87 catcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgatttt 185  Q
    |||||||||||||||||||||||| | |   || ||||||||||||||| ||||||||||||    | |||| ||||||||| |||| | |||||||||     
T  8560392 catcgattttgattgcgattttacgagtcccgactttgctatcctatattgattctacaaaaaaccttgagtaaaatccttcgattttgattgcgatttc 8560293  T
Q  186 acgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||||  | || ||||| |||  |||||| || |||||| ||| |||||||||||| |||||||    
T  8560292 acga-gtctcgattttgctactcccttttgacttgaagtaaagtcccgattttgataaccttg 8560231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 26208254 - 26208316
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaa 146  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||| |||| |||||| |||||    
T  26208254 atccatcaattttaattgcgattttagaatttttgattttgctattctatgtcgattttacaa 26208316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 251
Target Start/End: Complemental strand, 6136460 - 6136340
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||| ||||||||| |||| ||||| ||  |||| | |||||||||||||||||||  ||||| || | ||||| |||| |||||||||||    
T  6136460 tatatcgattctataaaagtagttgagtaaaatcttttgattttgattgcgattttacgattttt-gattttgcttttcccttccgatatgaagcaaaat 6136362  T
Q  230 cccgattttgacaaccttgcct 251  Q
       ||||||||||| |||||||    
T  6136361 tgtgattttgacaaacttgcct 6136340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 17064545 - 17064661
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||| ||||||||||||||||| |||| ||||||||| |||| | |||||||||||||| || || |||||  | |   |||||||  |||||||||||    
T  17064545 tatattgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacga-ttgtcgattttgatcttttctttcgacctgaagcaaaat 17064643  T
Q  230 cccgattttgacaacctt 247  Q
    ||| ||||||||||||||    
T  17064644 cccaattttgacaacctt 17064661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 240
Target Start/End: Original strand, 3041419 - 3041570
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||| ||||||||||||| | |   || |||||||||||| |||| ||||||||||||  | |||| ||||||||| |||| | ||||||||||||    
T  3041419 tcgattttaattgcgattttacgagtcccgactttgctatcctacatcgtttctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 3041518  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttga 240  Q
    ||  |  | ||||| |||  || |||||| |||||| ||||||||||||||||    
T  3041519 ga-gtcccgattttgctactccatttcgacttgaagtaaaatcccgattttga 3041570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 13006092 - 13006174
Alignment:
Q  159 aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaa 243  Q
    ||||| |||||||| | |||||||||||||| ||||||||||| |||| |||||||||  | |||| ||||||||||||||||||    
T  13006092 aaatcattcaattttgattgcgattttacga-ttttcaattttgctattccctttcgacctaaagc-aaatcccgattttgacaa 13006174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 42697086 - 42697202
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||||| || | ||||||||||||||   |||||||||||| ||| |  |  |||||| | | | |||||  |||||||||||    
T  42697086 tatatcgattctacaaaagtagttgaataaaatccttcaattttagttgcgattttacaattgtcga--ttttctcttctcattcgacctgaagcaaaat 42697183  T
Q  230 cccgattttgacaaccttg 248  Q
    || ||||||||||||||||    
T  42697184 cctgattttgacaaccttg 42697202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 3449201 - 3449084
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||||| || | ||||| ||| |||| | |||||||||||||| || || ||||| || | | ||||| |  | |||||||||    
T  3449201 tatatcgattctacaaaagtagttgaataaaatcattcgattttggttgcgattttacga-ttgtcgattttgctcttctctttcaacctaaagcaaaat 3449103  T
Q  230 cccgattttgacaaccttg 248  Q
    ||| |||||||||||||||    
T  3449102 cccaattttgacaaccttg 3449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 17796805 - 17796918
Alignment:
Q  133 tatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcc 231  Q
    ||||||||||||||||||||| |||| |||| |||| ||||   |||| ||||||||||||||  |||||||| | |||||||||  |||| |||||||     
T  17796805 tatcgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttacgattttt-tatttttcttttccctttcgacctgaatcaaaatct 17796903  T
Q  232 cgattttgacaacct 246  Q
    | ||||||| |||||    
T  17796904 caattttgataacct 17796918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 19105245 - 19105358
Alignment:
Q  133 tatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcc 231  Q
    ||||||||||||||||||||| |||| |||| |||| ||||   |||| ||||||||||||||  |||||||| | |||||||||  |||| |||||||     
T  19105245 tatcgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttacgattttt-tatttttcttttccctttcgacctgaatcaaaatct 19105343  T
Q  232 cgattttgacaacct 246  Q
    | ||||||| |||||    
T  19105344 caattttgataacct 19105358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 25870213 - 25870096
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||||||||||  |||| ||||||| |||||  |||| | |||||||||||||||| | | ||||| || | | |||||||  | |||||||||    
T  25870213 tatatcgattctacaaacttagttgagtaaaatcctttgattttggttgcgattttacgattgt-cgattttactcttctctttcgacctaaagcaaaat 25870115  T
Q  230 cccgattttgacaaccttg 248  Q
    | |||||||||||||||||    
T  25870114 ctcgattttgacaaccttg 25870096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 18014187 - 18014288
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | |   || ||||||||||||||||| || || ||||||  | |||| ||||||||| |||| | ||||||||||||    
T  18014187 tcgattttgattgcgattttacgagtcccgactttgctatcctatatcggttttataaaagtccttgagtaaaatccttcgattttgattgcgattttac 18014286  T
Q  188 ga 189  Q
    ||    
T  18014287 ga 18014288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 21553825 - 21553764
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagt 150  Q
    |||||||||||||||||||||| | |   || |||||||||||||||| |||||||||||||    
T  21553825 tcgattttgattgcgattttacgagtcccgactttgctatcctatatcaattctacaaaagt 21553764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 22971005 - 22971106
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||| ||||||| | |   || |||||||||||| ||| |||||||||||||  | |||| ||||||||| |||| | ||||||||||||    
T  22971005 tcgattttgattgcaattttacgagtcgggactttgctatcctacatcaattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 22971104  T
Q  188 ga 189  Q
    ||    
T  22971105 ga 22971106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 6136422 - 6136387
Alignment:
Q  91 gattttgattgcgattttacaatttttgattttgct 126  Q
    |||||||||||||||||||| |||||||||||||||    
T  6136422 gattttgattgcgattttacgatttttgattttgct 6136387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 20756226 - 20756257
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  20756226 atccatcgattttgattgcgattttacaattt 20756257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 25870247 - 25870216
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  25870247 atccatcgattttgattgcgattttacaattt 25870216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 28745980 - 28746011
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  28745980 atccatcgattttgattgcgattttacaattt 28746011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 39428107 - 39428138
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  39428107 atccatcgattttgattgcgattttacaattt 39428138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 6861036 - 6860986
Alignment:
Q  197 atttttctataccctttcgatttgaagcaaaatcccgattttgacaacctt 247  Q
    ||||| |||| |||||||||  |||||||||||||| ||||||||||||||    
T  6861036 attttactattccctttcgacctgaagcaaaatcccaattttgacaacctt 6860986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 28136000 - 28136117
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||| ||| |||||||||||| |||| ||||||||| |||| | | |||||||||||| || || ||||| || |||| |||  | |||||| |||||    
T  28136000 tatatcaattttacaaaagtagttgagtaaaatccttcgattttgatagcgattttacga-ttctcgattttactctaccattttaacttgaagtaaaat 28136098  T
Q  230 cccgattttgacaaccttg 248  Q
    ||  |||||||||||||||    
T  28136099 cctaattttgacaaccttg 28136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 15806279 - 15806222
Alignment:
Q  191 ttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||||| ||||| || | |||||||||  |||||||||||| |||||||||||||||||    
T  15806279 ttttcgattttgcttttccctttcgagctgaagcaaaatctcgattttgacaaccttg 15806222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 19348749 - 19348810
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagt 150  Q
    |||||||||||||||||||||| | |   || |||||||||||||||||||| || ||||||    
T  19348749 tcgattttgattgcgattttacgagtcccgaatttgctatcctatatcgattttataaaagt 19348810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 52519848 - 52519885
Alignment:
Q  92 attttgattgcgattttacaatttttgattttgctatc 129  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  52519848 atttcgattgcgattttacaattttcgattttgctatc 52519885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 29067481 - 29067509
Alignment:
Q  84 atccatcgattttgattgcgattttacaa 112  Q
    |||||||||||||||||||||||||||||    
T  29067481 atccatcgattttgattgcgattttacaa 29067509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 29384196 - 29384086
Alignment:
Q  138 attctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgatt 236  Q
    |||||||||||||||| ||||||| |||||| |||| | |||||||||||||||| | | |||||||| |   |||||||  ||||||||||||||||||    
T  29384196 attctacaaaagtagttgagtaaaatccttcgattttggttgcgattttacgattgt-cgatttttctcttttctttcgacctgaagcaaaatcccgatt 29384098  T
Q  237 ttgacaaccttg 248  Q
    ||||||||||||    
T  29384097 ttgacaaccttg 29384086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 22910094 - 22909978
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||||||||||| |||| || |||| ||||||||||||| |||||||||||||| || || |||||||| | | |||||||  ||| | |||||    
T  22910094 tatatcgattctacaaaaatagttgaataaaatccttcaatttcggttgcgattttacga-ttgtcgatttttctcttctctttcgacatgatgtaaaat 22909996  T
Q  230 cccgattttgacaaccttg 248  Q
     ||||||||||||||||||    
T  22909995 -ccgattttgacaaccttg 22909978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 2040315 - 2040464
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | |   || |||||||||||| |||||||||||||||||    |||| ||||||||| |||| | ||||||||||||    
T  2040315 tcgattttgattgcgattttacgagtcccgactttgctatcctacatcgattctacaaaagtccatgagtaaaatccttcgattttgattgcgattttac 2040414  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgatttt 238  Q
    ||  || | ||||| |||  | ||||||| |||||| ||| ||||||||||    
T  2040415 ga-gttccgattttgctactctctttcgacttgaagtaaagtcccgatttt 2040464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 6811057 - 6811174
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||| |||||||||||||||| || |||| | |||| |||| | |||||||||||||||| | | ||||| || | | ||||||||||||| |||| |    
T  6811057 tatatctattctacaaaagtagttgattaaaattcttcgattttggttgcgattttacgattgt-cgattttgctcttctctttcgatttgaaacaaagt 6811155  T
Q  230 cccgattttgacaaccttg 248  Q
     ||||||||||||||||||    
T  6811156 tccgattttgacaaccttg 6811174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 15761249 - 15761132
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||| | ||||||| |||||| ||||   |||||||||||||||| | ||||||   | | ||||||||  ||||||||||||    
T  15761249 tatatcgattctacaaaagtaattgagtaaaatccttcgatttatattgcgattttacgattct-caatttcattcttccctttcggcttgaagcaaaat 15761151  T
Q  230 cccgattttgacaaccttg 248  Q
    ||| ||||| |||||||||    
T  15761150 cccaattttaacaaccttg 15761132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 26575048 - 26574933
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgat 182  Q
    ||||||||||||||||||| |||||||       ||||||||||||||||||  |||||||| || ||||   ||||| ||||||||||| | |||||||    
T  26575048 atccatcgattttgattgctattttac-------gattttgctatcctatatgaattctacataaatagttaggtaaaatccttcaattttgattgcgat 26574956  T
Q  183 tttacgatttttcaatttttctat 206  Q
    ||||||| | ||||||||||||||    
T  26574955 tttacga-tattcaatttttctat 26574933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 247
Target Start/End: Original strand, 17647201 - 17647351
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgat 182  Q
    |||||||||||||||||||||||||||||||             || |||||||||||||||||| |||| |||| ||||||||| |||| | |||||||    
T  17647201 atccatcgattttgattgcgattttacaatt-------------tcttatatcgattctacaaaactagttgagtaaaatccttcgattttgattgcgat 17647287  T
Q  183 tttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaacctt 247  Q
    |||| || || || ||||| ||   | |||||||  |||||||||||||||||||| ||||||||    
T  17647288 tttatga-ttgtcgattttgctcatctctttcgacctgaagcaaaatcccgattttaacaacctt 17647351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 7489175 - 7489057
Alignment:
Q  130 ctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaa 228  Q
    |||||||||||||||||||||  | ||||||| |||| | |||| | |||||||||||||| |  | |||||| ||||  |||||||| |||||| |||     
T  7489175 ctatatcgattctacaaaagtccttgagtaaaatcctccgattttgattgcgattttacgagtcct-aattttgctatttcctttcgacttgaagtaaag 7489077  T
Q  229 tcccgattttgacaaccttg 248  Q
    ||| ||||||||||||||||    
T  7489076 tcctgattttgacaaccttg 7489057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 17566344 - 17566454
Alignment:
Q  139 ttctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattt 237  Q
    ||||||||||||||| ||||||| | |||| |||| | |||| ||||||||||||| ||||||| || | |||||| ||  ||||||||||||| |||||    
T  17566344 ttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgatttt-caattttgctcttcccttttgacctgaagcaaaatcctgattt 17566442  T
Q  238 tgacaaccttgc 249  Q
    | | ||||||||    
T  17566443 taaaaaccttgc 17566454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 5922283 - 5922400
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    |||||||||||||||||||||||  | ||||||| |||||| |||| | |||||||| ||| || ||   ||||| |||| |||||||||  ||||| ||    
T  5922283 tcctatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgattgtac-atgttctgattttgctattccctttcgacctgaagtaa 5922381  T
Q  227 aatcccgattttgacaacc 245  Q
    | |||||||||||||||||    
T  5922382 agtcccgattttgacaacc 5922400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 15231859 - 15231976
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||||||||| ||||||| || | | ||||   |||||||||||||||| | | ||||| || | | ||||||| ||||||||||||    
T  15231859 tatatcgattctacaaaagtagttgagtaaaatcgtacgattttagttgcgattttacgattgt-cgattttgctcttctctttcgacttgaagcaaaat 15231957  T
Q  230 cccgattttgacaaccttg 248  Q
    | ||| ||| |||||||||    
T  15231958 ctcgaatttaacaaccttg 15231976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 26879779 - 26879821
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgct 126  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  26879779 atccatcaattttgattgcgattttacgatttttgattttgct 26879821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 40541751 - 40541594
Alignment:
Q  91 gattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacga 189  Q
    |||||||||||||||||||| | |   || ||||||||| ||||||||||||||| ||||  | || | ||||| |||||||| | ||||||||||||||    
T  40541751 gattttgattgcgattttacgagtcccgactttgctatcttatatcgattctacagaagtccttgaataaaatctttcaattttgattgcgattttacga 40541652  T
Q  190 tttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
      |  | ||||| |||   |||||||| |||||| ||| |||||||||||| |||||||    
T  40541651 -gtcccgattttgctacttcctttcgacttgaagtaaagtcccgattttgataaccttg 40541594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 11879867 - 11879955
Alignment:
Q  159 aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||||||||| |||| | |||||||||||||| ||  | ||||| |||| |||||| ||  ||||| ||||||||||||||||||||||||    
T  11879867 aaatccttcgattttgattgcgattttacgagttc-cgattttactattcccttttgacctgaagtaaaatcccgattttgacaaccttg 11879955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 11897283 - 11897371
Alignment:
Q  159 aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||||||||| |||| | |||||||||||||| ||  | ||||| |||| |||||| ||  ||||| ||||||||||||||||||||||||    
T  11897283 aaatccttcgattttgattgcgattttacgagttc-cgattttactattcccttttgacctgaagtaaaatcccgattttgacaaccttg 11897371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 11974022 - 11973942
Alignment:
Q  164 cttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaacc 245  Q
    ||||||||||| ||||||||||| |||||| | ||||| |||| | ||||| || ||| ||||||||| |||||||||||||    
T  11974022 cttcaatttcgattgcgattttatgatttt-cgattttgctattctctttcaatctgatgcaaaatcctgattttgacaacc 11973942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 24414181 - 24414062
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    ||||||||||||||||||||| |  | |||| ||||||||| |||| | ||||||||||||||  | | |||||| |||| |||||||||  ||||| ||    
T  24414181 tcctatatcgattctacaaaaattcttgagtaaaatccttcgattttgattgcgattttacga-gtctaaattttgctattccctttcgacatgaagtaa 24414083  T
Q  227 aatcccgattttgacaacctt 247  Q
    | | || ||||||||||||||    
T  24414082 agttccaattttgacaacctt 24414062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 45403264 - 45403379
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    |||||||||||||||||||||||  |  ||| ||||||||| |||| | ||||||||||||||  | || ||||| |||| |||||||||  ||||  ||    
T  45403264 tcctatatcgattctacaaaagtctttaagtaaaatccttcgattttgattgcgattttacga-gtctcgattttgctattccctttcgacgtgaaataa 45403362  T
Q  227 aatcccgattttgacaa 243  Q
    | |||||||||||||||    
T  45403363 agtcccgattttgacaa 45403379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 15294771 - 15294802
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  15294771 atccatcgattttgattgcgattttacaattt 15294802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 15475140 - 15475171
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  15475140 atccatcgattttgattgcgattttacaattt 15475171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 23142379 - 23142409
Alignment:
Q  85 tccatcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||||    
T  23142379 tccatcgattttgattgcgattttacaattt 23142409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 24056461 - 24056348
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||| |||||||||||| |||| ||||||| |||||| |||| | || | |||||| ||| || ||||||| || | |||||||||  |||||||||||    
T  24056461 tatattgattctacaaaactagttgagtaaaatccttcgattttgattaccattttatgatatt-caattttgctcttccctttcgacctgaagcaaaat 24056363  T
Q  230 cccgattttgacaac 244  Q
    | || ||||||||||    
T  24056362 ctcggttttgacaac 24056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 3094281 - 3094248
Alignment:
Q  84 atccatcgattttgattgcgattttacaattttt 117  Q
    ||||||||||||||||||||||||||| ||||||    
T  3094281 atccatcgattttgattgcgattttacgattttt 3094248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 7489205 - 7489176
Alignment:
Q  87 catcgattttgattgcgattttacaatttt 116  Q
    ||||||||||||||||||||||||||||||    
T  7489205 catcgattttgattgcgattttacaatttt 7489176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 16752219 - 16752320
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttac 187  Q
    ||||||||||||||||| |||| | |   || |||||| ||||| ||| ||||||||||| |  | ||||||| |||||| |||| ||||||||||||||    
T  16752219 tcgattttgattgcgatgttaccagtcccgactttgctttcctacatcaattctacaaaattccttgagtaaaatccttcgattttgtttgcgattttac 16752318  T
Q  188 ga 189  Q
    ||    
T  16752319 ga 16752320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 11879804 - 11879836
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttt 116  Q
    ||||||||||||||| |||||||||||||||||    
T  11879804 atccatcgattttgaatgcgattttacaatttt 11879836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 11897220 - 11897252
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttt 116  Q
    ||||||||||||||| |||||||||||||||||    
T  11897220 atccatcgattttgaatgcgattttacaatttt 11897252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 26575138 - 26575098
Alignment:
Q  41 tataagtatttagcggacttgaaactttgagtcatttatga 81  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  26575138 tataagtattttgtggactttaaactttgagtcatttatga 26575098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 145805 - 145942
Alignment:
Q  110 caatttttgattttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctatac 208  Q
    ||||||| |||||||||||| |||||||||||||||||||||   ||||||| |||||| |||| | |||| ||||||||||||| | ||||  ||||      
T  145805 caattttagattttgctatcttatatcgattctacaaaagtaagtgagtaaaatccttcgattttgattgctattttacgatttt-cgatttaactattt 145903  T
Q  209 cctttcgatttgaagcaaaatcccgattttgacaacctt 247  Q
     |||||||  |||||||||||| | ||||||||||||||    
T  145904 tctttcgacctgaagcaaaatctcaattttgacaacctt 145942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 142825 - 142929
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    ||||||||||||| ||||||| |||||  ||||||||||||||||||| ||||||||||| |  | |||| ||||||||||||||   |||||||||||     
T  142825 tcgattttgattgagattttagaatttgggattttgctatcctatatctattctacaaaactccttgagtaaaatccttcaattttaattgcgattttag 142924  T
Q  188 gattt 192  Q
    |||||    
T  142925 gattt 142929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 39845190 - 39845055
Alignment:
Q  87 catcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgatttt 185  Q
    |||||||||| ||||||||||||  ||||| || |||||||||||||||||| | ||||||| |||| |||| ||||| ||||||||   |||| |||||    
T  39845190 catcgattttaattgcgattttatgattttcgactttgctatcctatatcgactttacaaaaatagttgagtaaaatcattcaattttaattgcaatttt 39845091  T
Q  186 acgatttttcaatttttctataccctttcgatttgaa 222  Q
    || | ||||| ||||| |||| | |||||||||||||    
T  39845090 ac-aattttcgattttgctattctctttcgatttgaa 39845055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 32881558 - 32881672
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||| ||||| ||||||| |||||| |||||  |||||||||||||||| | | ||||| || | | ||||| || |||||||||||    
T  32881558 tatatcgattctacaaacgtagttgagtaaaatccttcgatttcagttgcgattttacgattgt-cgattttgcttttctctttcaatctgaagcaaaat 32881656  T
Q  230 cccgattttgacaacc 245  Q
    ||||||||||| ||||    
T  32881657 cccgattttgaaaacc 32881672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 16434734 - 16434864
Alignment:
Q  118 gattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcga 216  Q
    ||||||| |||| |||||| ||||||||||||| ||||||| ||||||||| |||| | |||| ||||||||| ||||| ||||| |||| |||||| ||    
T  16434734 gattttgttatcttatatcaattctacaaaagttgtcgagtaaaatccttcgattttgattgcaattttacga-ttttcgattttgctattcccttttga 16434832  T
Q  217 tttgaagcaaaatcccgattttgacaaccttg 248  Q
      |  || ||||||| ||||||||||| ||||    
T  16434833 cctagagaaaaatcctgattttgacaatcttg 16434864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 13100428 - 13100547
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    ||||||||||||||||| ||  | ||||||| |||||  |||| | |||||||||||||| ||  | ||||| | || ||||||||| |||||| ||| |    
T  13100428 tatatcgattctacaaatgtccttgagtaaaatcctttgattttgattgcgattttacgagttc-cgattttgccattccctttcgacttgaagtaaagt 13100526  T
Q  230 cccgattttgacaaccttgcc 250  Q
    |||||||||||||||||||||    
T  13100527 cccgattttgacaaccttgcc 13100547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 14074377 - 14074258
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    |||||||||||||||||||||||  | ||||||| |||||| |||| | ||| ||||||| || ||  ||||||| |||| |||||||||  ||||| ||    
T  14074377 tcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtgattttatgagttc-caattttgctattccctttcgacctgaagtaa 14074279  T
Q  227 aatcccgattttgacaacctt 247  Q
    | ||| |||||||||||||||    
T  14074278 agtcctgattttgacaacctt 14074258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 12002790 - 12002731
Alignment:
Q  91 gattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagt 150  Q
    |||||||||||||||||||| | |   ||||||||||| |||||||||||||||||||||    
T  12002790 gattttgattgcgattttacgagtcccgattttgctattctatatcgattctacaaaagt 12002731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 21242966 - 21242855
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgat-tttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcga 181  Q
    |||||||||||||||||| ||||| || |||||| |  |||| |||| |||||||||||||||||| |||| |||| |||| ||||||||    || |||    
T  21242966 atccatcgattttgattgtgatttaacgatttttcaaatttgttatcttatatcgattctacaaaattagttgagtaaaattcttcaattgtaattacga 21242867  T
Q  182 ttttacgatttt 193  Q
    ||||||||||||    
T  21242866 ttttacgatttt 21242855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 41032664 - 41032547
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||||||||||| |||| |||| |||| |||| ||||   |||||||||||||| || |||||||| || | | ||||| |  ||||| |||||    
T  41032664 tatatcgattctacaaaactagttgagtaaaattcttcgattttagttgcgattttacga-ttatcaattttgctcttctctttcaacctgaagtaaaat 41032566  T
Q  230 cccgattttgacaaccttg 248  Q
    ||| |||||||||||||||    
T  41032565 ccctattttgacaaccttg 41032547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 17055808 - 17055751
Alignment:
Q  133 tatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacga 189  Q
    ||||||||||||||||||||| |||| ||||||||| |||| | ||||||||||||||    
T  17055808 tatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttacga 17055751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 17197430 - 17197306
Alignment:
Q  121 tttgctatcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgattt 219  Q
    |||||||||||| || ||||||||||||||  | ||||||| |||||| ||||   |||||||||||||| ||  | ||||| |||  ||||||||| ||    
T  17197430 tttgctatcctacattgattctacaaaagtccttgagtaaaatccttcgattttagttgcgattttacgagttc-cgattttgctactccctttcgactt 17197332  T
Q  220 gaagcaaaatcccgattttgacaacc 245  Q
    |||| ||| |||||||||||| ||||    
T  17197331 gaagtaaagtcccgattttgataacc 17197306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 18304736 - 18304705
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  18304736 atccatcgattttgattgcgattttacaattt 18304705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 23528860 - 23528891
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  23528860 atccatcgattttgattgcgattttacaattt 23528891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 25146660 - 25146542
Alignment:
Q  130 ctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaa 228  Q
    ||||||||||||||| ||||   | ||||||| |||||| |||| | |||||||||||||| ||| | ||||| |||| ||||||| |  ||||| |||     
T  25146660 ctatatcgattctacgaaagaccttgagtaaaatccttcgattttgattgcgattttacga-tttccgattttgctattccctttcaacctgaagtaaag 25146562  T
Q  229 tcccgattttgacaaccttg 248  Q
    ||| ||||||||||||||||    
T  25146561 tcctgattttgacaaccttg 25146542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 16125379 - 16125349
Alignment:
Q  85 tccatcgattttgattgcgattttacaattt 115  Q
    |||||||||||||||||||||||||||||||    
T  16125379 tccatcgattttgattgcgattttacaattt 16125349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 117
Target Start/End: Complemental strand, 17869672 - 17869642
Alignment:
Q  87 catcgattttgattgcgattttacaattttt 117  Q
    |||||||||||||||||||||||||||||||    
T  17869672 catcgattttgattgcgattttacaattttt 17869642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 23528891 - 23528953
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacga 189  Q
    |||||||||||||||||||||||  | |||| ||||||||| |||| | ||||||||||||||    
T  23528891 tcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttacga 23528953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 115
Target Start/End: Original strand, 13100294 - 13100323
Alignment:
Q  86 ccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||    
T  13100294 ccatcgattttgattgcgattttacaattt 13100323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 47786096 - 47786157
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatt 191  Q
    |||||| |||||||||||||||| |||| ||||||||| |||| | ||| ||||||||||||    
T  47786096 tatatcaattctacaaaagtagttgagtaaaatccttcgattttggttgtgattttacgatt 47786157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 16434778 - 16434822
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctat 128  Q
    |||| |||||||||||||| ||||||| ||||| |||||||||||    
T  16434778 atccttcgattttgattgcaattttacgattttcgattttgctat 16434822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 25146628 - 25146584
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctat 128  Q
    |||| |||||||||||||||||||||| ||||  |||||||||||    
T  25146628 atccttcgattttgattgcgattttacgatttccgattttgctat 25146584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 248
Target Start/End: Complemental strand, 56350 - 56199
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgat 182  Q
    |||||||||||||||||||||||||||||||             |||||||||||||||||||||||  | |||| ||||||||| |||| | |||||||    
T  56350 atccatcgattttgattgcgattttacaatt-------------tcctatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgat 56264  T
Q  183 tttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    |||| ||| | || ||||| |||| |||||||||  ||||| ||| || |||||||||||||||||    
T  56263 ttta-gatgtctcgattttgctattccctttcgacctgaagtaaagtctcgattttgacaaccttg 56199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 8676 - 8796
Alignment:
Q  128 tcctatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaa 226  Q
    ||||||||||||||||| ||| || | ||||||| ||||||||||| | ||||||||||||||  || | |||||  ||| |||||||||  ||||| ||    
T  8676 tcctatatcgattctacgaaaatacttgagtaaaatccttcaattttgattgcgattttacga-gttccgattttgttattccctttcgacctgaagtaa 8774  T
Q  227 aatcccgattttgacaaccttg 248  Q
    | |||||||||||| |||||||    
T  8775 agtcccgattttgagaaccttg 8796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 8645 - 8676
Alignment:
Q  84 atccatcgattttgattgcgattttacaattt 115  Q
    ||||||||||||||||||||||||||||||||    
T  8645 atccatcgattttgattgcgattttacaattt 8676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 14859 - 14758
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||||||||||||||||| | |   || |||||||||||| |||||||||||||||||  | || | ||||||||| |||| | ||||||||||||    
T  14859 tcgattttgattgcgattttacgagtcccgactttgctatcctacatcgattctacaaaagtctttgaataaaatccttcgattttgattgcgattttac 14760  T
Q  188 ga 189  Q
    ||    
T  14759 ga 14758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 61205 - 61089
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||||||||||||||||||||  |||||| | |||| |||| | ||| ||||||||||||||  |||||| || | | |||| ||  |||||||||||    
T  61205 tatatcgattctacaaaagtagttaagtaaaattcttcgattttgattgtgattttacgatttta-aattttacttttctcttttgacctgaagcaaaat 61107  T
Q  230 cccgattttgacaacctt 247  Q
    |||||||||| |||||||    
T  61106 cccgattttggcaacctt 61089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 48473 - 48445
Alignment:
Q  219 tgaagcaaaatcccgattttgacaacctt 247  Q
    |||||||||||||||||||||||||||||    
T  48473 tgaagcaaaatcccgattttgacaacctt 48445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 38459 - 38301
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttac 187  Q
    |||||||| ||||||||||||| | |   ||||||||||||||| |||||||||||||||||    |||| ||||||||| || | | |||| |||||||    
T  38459 tcgattttaattgcgattttacgagtagcgattttgctatcctacatcgattctacaaaagtccatgagtaaaatccttcgatct-gattgcaattttac 38361  T
Q  188 gatttttcaatttttctataccctttcgatttgaagcaaaatcccgattttgacaaccttg 248  Q
    ||  |  | ||||| ||||  |||||||| |||||| ||| ||||||||||||||||||||    
T  38360 ga-gtcccgattttgctatttcctttcgacttgaagtaaagtcccgattttgacaaccttg 38301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 916 - 1026
Alignment:
Q  139 ttctacaaaagtagtcgagtaaa-tccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaatcccgattt 237  Q
    ||||||||||||||| ||||||| | |||| |||| | |||| ||||||||||||| ||||||| || | |||||| ||  ||||||||||||| |||||    
T  916 ttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttacgatttt-caattttgctcttcccttttgacctgaagcaaaatcctgattt 1014  T
Q  238 tgacaaccttgc 249  Q
    | | ||||||||    
T  1015 taaaaaccttgc 1026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 133046 - 132947
Alignment:
Q  91 gattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaagtagtcga-gtaaatccttcaatttcgtttgcgattttacga 189  Q
    |||||||||||||||||||| | |   || |||||||||||| |||||||||||||||||  | || | ||||||||| |||| | ||||||||||||||    
T  133046 gattttgattgcgattttacgagtcccgactttgctatcctacatcgattctacaaaagtccttgaggaaaatccttcgattttgattgcgattttacga 132947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 8850 - 8741
Alignment:
Q  131 tatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttttcaatttttctataccctttcgatttgaagcaaaat 229  Q
    |||||| |||||||||||||||| |||| ||||||||| |||| | || |||||||| || ||||| ||||| || |||| |||| |  | |||||||||    
T  8850 tatatctattctacaaaagtagttgagtaaaatccttcgattttgattacgattttatga-ttttcgattttgctctaccttttcaacctaaagcaaaat 8752  T
Q  230 cccgattttga 240  Q
    |||||||||||    
T  8751 cccgattttga 8741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 8884 - 8856
Alignment:
Q  84 atccatcgattttgattgcgattttacaa 112  Q
    |||||||||||||||||||||||||||||    
T  8884 atccatcgattttgattgcgattttacaa 8856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 24582 - 24641
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctacaaaa 148  Q
    |||||||||||||||||||||  | | | || |||||||||||| |||||||||||||||    
T  24582 tcgattttgattgcgattttatgagtctcgactttgctatcctacatcgattctacaaaa 24641  T

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Target: scaffold0259 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 18588 - 18630
Alignment:
Q  84 atccatcgattttgattgcgattttacaatttttgattttgct 126  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||    
T  18588 atccatctattttgattgcaattttacgatttttgattttgct 18630  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 33157 - 33239
Alignment:
Q  112 atttttgattttgctatcctatatcgattctacaaaagtagtcgagt-aaatccttcaatttcgtttgcgattttacgatttt 193  Q
    ||||| ||||| |||||| |||||||||||||||||||||   |||| |||| |||| |||| | |||||||||||| |||||    
T  33157 attttagatttcgctatcttatatcgattctacaaaagtaagtgagtaaaattcttcgattttgattgcgattttacaatttt 33239  T

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Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 33212 - 33246
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgatttt 123  Q
    |||||||||||||||||||||||||||| ||||||    
T  33212 tcgattttgattgcgattttacaattttcgatttt 33246  T

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Target: scaffold1178 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 621 - 653
Alignment:
Q  118 gattttgctatcctatatcgattctacaaaagt 150  Q
    ||||||||||||||||||| |||||||||||||    
T  621 gattttgctatcctatatctattctacaaaagt 653  T

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Target: scaffold0526 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 8352 - 8408
Alignment:
Q  89 tcgattttgattgcgattttacaatttttgattttgctatcctatatcgattctaca 145  Q
    |||||||||||||||||||||| | |   || |||||||||||||||| ||||||||    
T  8352 tcgattttgattgcgattttacgagtcccgactttgctatcctatatcaattctaca 8408  T

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Target: scaffold0061 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 76212 - 76180
Alignment:
Q  118 gattttgctatcctatatcgattctacaaaagt 150  Q
    ||||||||||||||| |||||||||||||||||    
T  76212 gattttgctatcctacatcgattctacaaaagt 76180  T

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