View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_300 (Length: 245)
Name: NF11324A_low_300
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_300 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 3067775 - 3067551
Alignment:
| Q |
21 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067775 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
3067676 |
T |
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| Q |
121 |
gagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
220 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067675 |
gagaataagaggccaacacgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
3067576 |
T |
|
| Q |
221 |
cagaagatgaactaagtgaaacaaa |
245 |
Q |
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||||||||||||||||||||||||| |
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| T |
3067575 |
cagaagatgaactaagtgaaacaaa |
3067551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 3055555 - 3055768
Alignment:
| Q |
24 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
123 |
Q |
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|||||| |||||||||||| | ||||| ||||||||| ||||| || |||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
3055555 |
ttggaccatagtgtggtctaaacctgataatatatgtaattatattgctaatgaagggagtggtgtttgtggatataatagcttctgcactttgggagtt |
3055654 |
T |
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| Q |
124 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
223 |
Q |
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||||||| |||||||||| ||||| |||| | ||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||| |||| ||||| |
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| T |
3055655 |
gataagagaccaacatgtcagtgtccaaaacgatactcactggttgatcctgatgatccacttggtagctgcaagccagacttcatacaaggatgtgcag |
3055754 |
T |
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| Q |
224 |
aagatgaactaagt |
237 |
Q |
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|||||||||||||| |
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| T |
3055755 |
aagatgaactaagt |
3055768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 3071411 - 3071190
Alignment:
| Q |
24 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
123 |
Q |
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|||||||| |||||||||||| ||| ||||||||||||| ||| || || | |||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
3071411 |
ttggactacagtgtggtctcatcctaaaaatatatgtcaatatattgttagttcaggtagtggtgtttgtggatataataccatctgcactttgggagat |
3071312 |
T |
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| Q |
124 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
223 |
Q |
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||||||| |||||||||||||||| |||| ||||||||||| | |||||||| |||||| |||||||||||||||||| ||||||| |||| ||||| |
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| T |
3071311 |
gataagagaccaacatgtcggtgtccaaaacgttactcactgcttgatcctgatgatccacatggtagctgcaagccagatttcatacaaggatgtgcag |
3071212 |
T |
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| Q |
224 |
aagatgaactaagtgaaacaaa |
245 |
Q |
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||||||||| |||| ||||||| |
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| T |
3071211 |
aagatgaacaaagtaaaacaaa |
3071190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 245
Target Start/End: Original strand, 3040546 - 3040767
Alignment:
| Q |
24 |
ttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttgggagag |
123 |
Q |
| |
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|||||||| |||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3040546 |
ttggactacagtgtggtctcatcctcgaaatatatgtcattattttgttactgaaggtagtggtgtttgtggatataatagcatatgcactttgggagat |
3040645 |
T |
|
| Q |
124 |
aataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatgcag |
223 |
Q |
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||| ||| ||| ||| |||||||| | | ||||||||||| || ||||||||| |||| | |||||||||||||||||| || |||| |||| ||||| |
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| T |
3040646 |
gatacgagaccagcatttcggtgtccagatagttactcactagttgatcctgactatccttatggtagctgcaagccagatttcgtacaaggatgtgcag |
3040745 |
T |
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| Q |
224 |
aagatgaactaagtgaaacaaa |
245 |
Q |
| |
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||||||||||| || ||||||| |
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| T |
3040746 |
aagatgaactatgtaaaacaaa |
3040767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 3034690 - 3034906
Alignment:
| Q |
21 |
aggttggactatagtgtggtctcagcctgaaaatatatgtcattattttcctaaattaggtagtggtgtttgtggatataatagctactgcactttggga |
120 |
Q |
| |
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||||||||| | |||||||||| ||||||| ||||||||| |||| || || ||||||||||||||||||||||||||||| |||||||||| | |
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| T |
3034690 |
aggttggaccacagtgtggtctaagcctgataatatatgtacttatattgttagtgcaggtagtggtgtttgtggatataatagcttatgcactttggaa |
3034789 |
T |
|
| Q |
121 |
gagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgcaagccagacctcatacatggatatg |
220 |
Q |
| |
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| ||||||| || | ||||| ||||| |||| | ||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||| || |
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| T |
3034790 |
gttgataagagaccgaaatgtcagtgtccaaaacgatactcgctggttgatcctgaagatccatttggtagctgcaagccagacttcatacaaggatgtg |
3034889 |
T |
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| Q |
221 |
cagaagatgaactaagt |
237 |
Q |
| |
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|||||||||||| |||| |
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| T |
3034890 |
cagaagatgaaccaagt |
3034906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 3042789 - 3042948
Alignment:
| Q |
78 |
aggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgac |
177 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||| ||||| |||||||||||||||||| ||| | || |
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| T |
3042789 |
aggtagtggtgtttgtggatataatagcttctgcactttgggagttgataagtgaccaacatgtcagtgtccaaaaagttactcactggttgatgccgat |
3042888 |
T |
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| Q |
178 |
gatccatttggtagctgcaagccagacctcatacatggatatgcagaagatgaactaagt |
237 |
Q |
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|||||| |||||| ||| ||||| || |||| || |||| ||||||||||||||||||| |
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| T |
3042889 |
gatccacttggtacttgcgagccaaacttcatgcaaggatgtgcagaagatgaactaagt |
3042948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 3063682 - 3063557
Alignment:
| Q |
78 |
aggtagtggtgtttgtggatataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgac |
177 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||| ||||| |||| ||||||||| | |||||| | |
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| T |
3063682 |
aggtagtggtgtttgtggatataatagcttctgcactttgggagatgataagagaccaaaatgtcagtgtccaaaacagtactcactgattgatcctaat |
3063583 |
T |
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| Q |
178 |
gatccatttggtagctgcaagccaga |
203 |
Q |
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||||||| ||| |||||||||||||| |
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| T |
3063582 |
gatccatatggcagctgcaagccaga |
3063557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 25125466 - 25125326
Alignment:
| Q |
97 |
tataatagctactgcactttgggagagaataagaggccaacatgtcggtgtcgaaaaagttactcactggtggatcctgacgatccatttggtagctgca |
196 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||| ||||| || |||||| |||||| ||| |
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| T |
25125466 |
tataatagcttctgcactttgggagttgataagagaccaacatgtcagtgtccaaaaagttactcactggttgatcccgatgatccacttggtacttgcg |
25125367 |
T |
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| Q |
197 |
agccagacctcatacatggatatgcagaagatgaactaagt |
237 |
Q |
| |
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||| |||| |||| || |||| || |||||||||||||||| |
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| T |
25125366 |
agcaagacttcatgcaaggatgtggagaagatgaactaagt |
25125326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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