View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_301 (Length: 245)
Name: NF11324A_low_301
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_301 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 341201 - 341424
Alignment:
| Q |
1 |
atctgagaaggcttttaaccaagcggaagagtccatcttctagagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341201 |
atctgagaaggcttttaaccaagcggaagagtccatcttctatagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaa |
341300 |
T |
|
| Q |
101 |
gagaagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341301 |
gagaagaaaatgactgaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatg |
341400 |
T |
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| Q |
201 |
aaatcaatgctgaaagtgatgatg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
341401 |
aaatcaatgctgaaagtgatgatg |
341424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 332912 - 333132
Alignment:
| Q |
4 |
tgagaaggcttttaaccaagcggaagagtccatcttctagagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
103 |
Q |
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||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||| ||||||||| |||| |||||| ||||||||||| || |||||| |
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| T |
332912 |
tgagaaggcttttaaccaagctgaagaatgcatcttctatagacacatcgtgcccgtttgtgtttagaagatgcaaaaatggcttcaaattggggaagag |
333011 |
T |
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| Q |
104 |
aagaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaa |
203 |
Q |
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| T |
333012 |
aaaaaaatgaccgaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatgaaa |
333111 |
T |
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| Q |
204 |
tcaatgctgaaagtgatgatg |
224 |
Q |
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|||||| ||||||||| |||| |
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| T |
333112 |
tcaatgttgaaagtgacgatg |
333132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 337167 - 337386
Alignment:
| Q |
5 |
gagaaggcttttaaccaagcggaagagtccatcttctagagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagaga |
104 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
337167 |
gagaaggcttttaaccaagctgaagaatccatcttctacagacacactgtgccggcttgtgtttggaagttgcaaagttggcttcaaatcggtgaagaga |
337266 |
T |
|
| Q |
105 |
agaaaatgacagaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaat |
204 |
Q |
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| T |
337267 |
aaaaaatgactgaagcatgcaaagtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatgaaat |
337366 |
T |
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| Q |
205 |
caatgctgaaagtgatgatg |
224 |
Q |
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| T |
337367 |
taatggtcaaagtaatgatg |
337386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 347549 - 347412
Alignment:
| Q |
4 |
tgagaaggcttttaaccaagcggaagagtccatcttctagagacacaccgtgccgatttgtgtttggaagttgcaaagttggcttcaaatcggagaagag |
103 |
Q |
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|||||| |||||||||||| ||||||| ||| ||||| ||||| | ||||| | |||||||||||||||||| ||||||||||| || |||||| |
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| T |
347549 |
tgagaaagcttttaaccaaattgaagagtgcatattctatagacatatagtgcctaaaagtgtttggaagttgcaaaaatggcttcaaattggtgaagag |
347450 |
T |
|
| Q |
104 |
aagaaaatgacagaggcatgcaaggtatttgatcaatt |
141 |
Q |
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| T |
347449 |
aaaaaaatgaccaaagcatgcaaagtatttgatcaatt |
347412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 356149 - 356086
Alignment:
| Q |
63 |
gtgtttggaagttgcaaagttggcttcaaatcggagaagagaagaaaatgacagaggcatgcaa |
126 |
Q |
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|||||||||||||||||| ||||||||||| || |||||||| || ||||| |||||||||| |
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| T |
356149 |
gtgtttggaagttgcaaaaatggcttcaaattggtgaagagaaaaatatgaccaaggcatgcaa |
356086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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