View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_302 (Length: 245)
Name: NF11324A_low_302
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_302 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 25252677 - 25252466
Alignment:
| Q |
23 |
tgcatgagctagaagttgataatgtgcaactaaataaggttctgttccagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
25252677 |
tgcatgagctagaagttgataatgtgcaactaaataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggt |
25252578 |
T |
|
| Q |
123 |
gccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagtt |
222 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25252577 |
gccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagtt |
25252478 |
T |
|
| Q |
223 |
ccgcatattctt |
234 |
Q |
| |
|
||||||| |||| |
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|
| T |
25252477 |
ccgcatagtctt |
25252466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 25168589 - 25168800
Alignment:
| Q |
23 |
tgcatgagctagaagttgataatgtgcaactaaataaggttctgttccagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggt |
122 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
25168589 |
tgcatgagctagaagttgataatgtgcaactaaataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggt |
25168688 |
T |
|
| Q |
123 |
gccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagtt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25168689 |
gccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagtt |
25168788 |
T |
|
| Q |
223 |
ccgcatattctt |
234 |
Q |
| |
|
||||||| |||| |
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|
| T |
25168789 |
ccgcatagtctt |
25168800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 25180257 - 25180468
Alignment:
| Q |
23 |
tgcatgagctagaagttgataatgtgcaactaaataaggttctgttccagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || ||| |
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| T |
25180257 |
tgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggt |
25180356 |
T |
|
| Q |
123 |
gccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagtt |
222 |
Q |
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|||||| | ||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25180357 |
gccattgcgccatttgcatatccattttgactgtaactccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagtt |
25180456 |
T |
|
| Q |
223 |
ccgcatattctt |
234 |
Q |
| |
|
||||||| |||| |
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|
| T |
25180457 |
ccgcatagtctt |
25180468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 25160075 - 25160239
Alignment:
| Q |
70 |
cagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttc |
169 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| ||||| || |||||||||||| ||||||||||| |||| ||| || || ||||||| || |
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| T |
25160075 |
cagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagctccatggctc |
25160174 |
T |
|
| Q |
170 |
attcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatattctt |
234 |
Q |
| |
|
|||||||| | ||||| || |||||||| |||||| || || |||||||||||||| |||| |
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| T |
25160175 |
gttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtctt |
25160239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 25000851 - 25000782
Alignment:
| Q |
160 |
tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcata |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||| |||||| || ||||||||||| ||||| |
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|
| T |
25000851 |
tccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcata |
25000782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 24986312 - 24986358
Alignment:
| Q |
160 |
tccatggttcattcaaagttatccaatgttttactctatctccaaat |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||| |||||| |
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|
| T |
24986312 |
tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaat |
24986358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 9213916 - 9213706
Alignment:
| Q |
24 |
gcatgagctagaagttgataatgtgcaactaaataaggttctgttccagaatcaccaccggtacaatttggattcaaccaagaagagcatcggcccggtg |
123 |
Q |
| |
|
||||||||||||||||| || |||| |||| ||| || || | |||||||||||||||| |||||||||||||||||| ||| || || || |||| |
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| T |
9213916 |
gcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaatttggattcaaccaactagaacaacgacctggtg |
9213817 |
T |
|
| Q |
124 |
ccatttcaccatttgcatacccatcttgactgtaagtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttc |
223 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| ||||||||||||||||||| | ||||| ||| || ||||| ||||| |||||||||||||| |
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|
| T |
9213816 |
ccattcgtccatttgcatagccattttgactgtaactccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttc |
9213717 |
T |
|
| Q |
224 |
cgcatattctt |
234 |
Q |
| |
|
||||| |||| |
|
|
| T |
9213716 |
agcatagtctt |
9213706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 29460042 - 29460103
Alignment:
| Q |
159 |
gtccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaag |
220 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| |||||||||||| |||||| ||||| |
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|
| T |
29460042 |
gtccatggttcattcaatgtgatccaatgctttaccctatctccaaattctttaaaacaaag |
29460103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 29423029 - 29422961
Alignment:
| Q |
161 |
ccatggttcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcata |
229 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| || || ||| |||||||||||| |||||||| |
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|
| T |
29423029 |
ccatggttcattcagtgtgatccaatgttttactctgtccccgaattctttaaagcaaagctccgcata |
29422961 |
T |
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