View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_305 (Length: 245)
Name: NF11324A_low_305
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_305 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 46613389 - 46613170
Alignment:
| Q |
16 |
acaatgaaaaggagcaagatcatgatgaagaactggaatttagaggaagcgatgcggtatcaatgttcacatgtggagaatcaatgttgttctttcttct |
115 |
Q |
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| T |
46613389 |
acaatgaaaaggagcaagatcatgacgaagaactggaatttagaggaagcgatgcggtatcaatgttcacatgtggagaatcaatgttgttctttcttct |
46613290 |
T |
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| Q |
116 |
cattagcatgatcatccagaaattgccaagttgcttgaaagattgaagaaatgggtggaatgaagtgagaggataaaaatgatgcattctattttcaagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46613289 |
cattagcatgatcatccagaaattgccaagttgcttgaaagattgaagaaatgggtggaatgaagtgaaaggataaaaatgatgcattctattttcaagt |
46613190 |
T |
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| Q |
216 |
gggattgaaacaccaaactc |
235 |
Q |
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|||||||||||||||||||| |
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| T |
46613189 |
gggattgaaacaccaaactc |
46613170 |
T |
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