View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_310 (Length: 244)
Name: NF11324A_low_310
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_310 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 52584299 - 52584074
Alignment:
| Q |
10 |
agatcagacacgtgagccttgtaatcaacctgtggtggagaatctaacaagtgattattttttcagtggtggaagtggaacttttgcttcaggttctaat |
109 |
Q |
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| T |
52584299 |
agatcagacacgtgagccttgtaatcaacctgtggtggagaatctaactagtgattattttttcagtggtggaagtggaacttttgcttcaggttctaat |
52584200 |
T |
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| Q |
110 |
aataataactcattattattgaaccgttctacttctacttcttatggaagtgagagttttggttccgttattgggaactctagataccttaaaccagtac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52584199 |
aataataactcattattattgaaccgttctacttctacttcttatggaagtgagagttttggttctgttattgggaactctagataccttaaaccagtac |
52584100 |
T |
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| Q |
210 |
agtcacttcttgaagatcttgttgat |
235 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52584099 |
agtcacttcttgaagatcttgttgat |
52584074 |
T |
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