View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_312 (Length: 244)
Name: NF11324A_low_312
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_312 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 41551207 - 41550978
Alignment:
| Q |
7 |
aatatttaggccataaattcaccaaactaaaatgcatttaaagaaactcnnnnnnnnnnnntaagaataagatgcattgaacaaacattgcaagattatg |
106 |
Q |
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| T |
41551207 |
aatatttaggccataaattcaccaaactaaaatgcatttaaagaaactcaaaaataaaaaataagaataagatgcattgaacaaacattgcaagattatg |
41551108 |
T |
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| Q |
107 |
ataaattgagatttgaagaaagaaattgacctatgcattgaccgaaatcaacgcgatgaagaaaaccgtctttagcaagcttatcaaaattcttctgcac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41551107 |
ataaattgagatttgaagaaagaaattgacctatgcattgaccgaaatcaacgcgatgaagaaaaccgtctttcgcaagcttatcaaaattcttctgcac |
41551008 |
T |
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| Q |
207 |
ttcgttccacgcatcaacaccgttggattt |
236 |
Q |
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| T |
41551007 |
ttcgttccacgcatcaacaccgttggattt |
41550978 |
T |
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