View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_313 (Length: 244)
Name: NF11324A_low_313
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_313 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 15693960 - 15693737
Alignment:
| Q |
21 |
atttgtttggtagcatatttcacatattcaaatatggtcatttaattcagattatcaaatataaattgaacaaacattttatatagattggcaggcacct |
120 |
Q |
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| T |
15693960 |
atttgtttggtagcatatttcacatattcaaatatggtcatttaattcagattatcaaatataaattgaacaaacattttatatagattggctggcacct |
15693861 |
T |
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| Q |
121 |
gcatatgaggaaacactgaatgcagatcttcctacaatcccattgattacaattcaacattgtactaataacttttcagaaacatctaaattaggggaag |
220 |
Q |
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| T |
15693860 |
gcatatgaggaaacactgaatgcagatcttcctacaatcccattgatcacaattcaacattgtactaataacttttcagaaacatctaaattaggggaag |
15693761 |
T |
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| Q |
221 |
gtggatttggatctgtctataagg |
244 |
Q |
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| T |
15693760 |
gtggatttggatctgtctataagg |
15693737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 15704668 - 15704565
Alignment:
| Q |
127 |
gaggaaacactgaatgcagatcttcctacaatcccattgattacaattcaacattgtactaataacttttcagaaacatctaaattaggggaaggtggat |
226 |
Q |
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| T |
15704668 |
gaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtggat |
15704569 |
T |
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| Q |
227 |
ttgg |
230 |
Q |
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| T |
15704568 |
ttgg |
15704565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 15806191 - 15806149
Alignment:
| Q |
188 |
ataacttttcagaaacatctaaattaggggaaggtggatttgg |
230 |
Q |
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| T |
15806191 |
ataacttttcagagtcatctaaattaggagaaggtggatttgg |
15806149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 12881313 - 12881374
Alignment:
| Q |
105 |
agattggcaggcacctgcatatgaggaaacactgaatgcagatcttcctacaatcccattga |
166 |
Q |
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| T |
12881313 |
agattggctggcacctgcatatgaggaagcactaaatgcagatcttcctacaatcccattga |
12881374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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