View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_314 (Length: 244)
Name: NF11324A_low_314
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_314 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 35557909 - 35558132
Alignment:
| Q |
11 |
aaaagaatcaataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaaga |
110 |
Q |
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| T |
35557909 |
aaaagaatcaataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgctaccatgactactactatcacaaaga |
35558008 |
T |
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| Q |
111 |
gtgaaagcacgttccaaattagccacaatgtcacttattgttggcctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagctcca |
210 |
Q |
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| T |
35558009 |
gtgaaagcacgttccaaattagccacaatatcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagctcca |
35558108 |
T |
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| Q |
211 |
ctgcttctgtttcattcatctctg |
234 |
Q |
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| T |
35558109 |
ctgcttctgtttcattcatctctg |
35558132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 35555322 - 35555394
Alignment:
| Q |
134 |
cacaatgtcacttattgttggcctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagc |
206 |
Q |
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| T |
35555322 |
cacaatgtcacttattgttggtctatcttttccttccaaatgcacacaatgcattgcagtatatgacacaagc |
35555394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 35555251 - 35555320
Alignment:
| Q |
13 |
aagaatcaataataatcaagtaaaattttcaatatcagtcagatccaatagagattgtagcactagaaatgc |
84 |
Q |
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| T |
35555251 |
aagaatcgataaaaatca--taacattatcaatgtcagtcagatccaatcgagattgtaacacaagaaatgc |
35555320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 25739918 - 25739961
Alignment:
| Q |
153 |
ggcctatcttttccttccaaatgcacacaatgcattgcagtata |
196 |
Q |
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| T |
25739918 |
ggcctttcttttccttccaaattcacacaatgcatagcagtata |
25739961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 31754808 - 31754870
Alignment:
| Q |
122 |
ttccaaattagccacaatgtcacttattgttggcctatcttttccttccaaatgcacacaatg |
184 |
Q |
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| T |
31754808 |
ttccaaattagccacaatatcagccatagttggtctatctttcccttccaaattcacacaatg |
31754870 |
T |
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