View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_316 (Length: 243)
Name: NF11324A_low_316
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_316 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 14538789 - 14538572
Alignment:
| Q |
20 |
aaattaccagtttcgttcgcctctaacctataaatatttgaatgcctcccaaattcttaaacaatggggtggttggaccaccccaaggccctaattatta |
119 |
Q |
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| T |
14538789 |
aaattaccagtttcgttcgcctctaacctataaatatttgaatgccttccaaattcttaaacaatggggtggttggaccaccccaaggccctaattatta |
14538690 |
T |
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| Q |
120 |
cattgttgttttgcttacttattcactcattatccttcaaccagacatcaaacaaaggcatgctaaaaactggaaaagcattccaagaaatatatccctt |
219 |
Q |
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| T |
14538689 |
cattgttgttttgcttactta------cattatccttcaaccagacatcaaacaaaggcatgctaaaaactggaaaagcattccaagaaatatatccctt |
14538596 |
T |
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| Q |
220 |
tcatttccacaacagattaccaga |
243 |
Q |
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| T |
14538595 |
tcatttccacaacagattaccaga |
14538572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 14526212 - 14526122
Alignment:
| Q |
128 |
ttttgcttacttattcactcattatccttcaaccagacatcaaacaaaggcatgctaaaaactggaaaagcattccaagaaatatatccctt |
219 |
Q |
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| T |
14526212 |
ttttgcttacttattcactcattaccctacaatcaagcatcaga-aaaggcacgctaaaacctggaaaagccttctaagaaatatatccctt |
14526122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 14548667 - 14548602
Alignment:
| Q |
176 |
ggcatgctaaaaactggaaaagcattccaagaaatatatccctttcatttccacaacagattacca |
241 |
Q |
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| T |
14548667 |
ggcatgctgaaacctgaaaaagctttccaagaaatacatcccttccattttcacaagacattacca |
14548602 |
T |
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