View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_327 (Length: 243)
Name: NF11324A_low_327
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_327 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 7839613 - 7839831
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatcccttttcatgttgaatcattgcaatttcgta |
119 |
Q |
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| T |
7839613 |
cactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
7839712 |
T |
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| Q |
120 |
gctctttctttgatgtctaacatcggaagcttccaccttataaaatataacaaaaacagttttccctttcatctcgtagtaacagtcaacgatcttaaca |
219 |
Q |
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| T |
7839713 |
gctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcatctcgtagtaacagtcaacgatcttaaca |
7839812 |
T |
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| Q |
220 |
agttcgtcaaggcaccaag |
238 |
Q |
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| T |
7839813 |
agttcgtcaaggcaccaag |
7839831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 7762944 - 7763160
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatcccttttcatgttgaatcattgcaatttcgta |
119 |
Q |
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| T |
7762944 |
cactgagagcacaaacacgattcaaagccaacctccatgctttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcata |
7763043 |
T |
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| Q |
120 |
gctctttctttga-tgtctaacatcggaagcttccaccttataaaatataacaaaaacag-ttttccctttcatctcgtagtaacagtcaacgatcttaa |
217 |
Q |
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| T |
7763044 |
actattcctctgactacctaacatctgaaggttctatcttataaaaaataacaaatactgattttctattt----ttgtcataacagtcaacgatcttga |
7763139 |
T |
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| Q |
218 |
caagttcgtcaaggcaccaag |
238 |
Q |
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| T |
7763140 |
ctagttcatcaaggcaccaag |
7763160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 7755665 - 7755704
Alignment:
| Q |
199 |
taacagtcaacgatcttaacaagttcgtcaaggcaccaag |
238 |
Q |
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| T |
7755665 |
taacagtcaacgatcttaacaagttcatcaaggcaccaag |
7755704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 7755491 - 7755571
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatcccttttcatgtt |
100 |
Q |
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| T |
7755491 |
cactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctcttttcatgtt |
7755571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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