View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_33 (Length: 425)
Name: NF11324A_low_33
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 49953183 - 49952767
Alignment:
| Q |
19 |
accatgcacgtcagctagtcttccgtaacgatcataaccttgcaccacaaccagctccctctcaccttgtagggtatgtatccaatgcaccactttttcc |
118 |
Q |
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| T |
49953183 |
accatgcacgtcagctagtcttccgtaacgatcataaccttgcaccacaaccagctccctctcaccttgtagggtatgtatccaatgcaccactttttcc |
49953084 |
T |
|
| Q |
119 |
tttaattaatactttgctttgctccctcctttaatttcatctacatattgcatatagct-ctttatcatacaaataaattggaatagaataagatgttgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49953083 |
tttaattaatactttgctttgctccctcctttaatttcatctacatattacatatagctcctttatcatacaaataaattggaatagaataagatgttgt |
49952984 |
T |
|
| Q |
218 |
gggttcgaacccagacactcgcactcatgtctcagtggtgctaaccaccgtactacaacacgagggacaattaatcttgttttcaaacatgcgataatat |
317 |
Q |
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| T |
49952983 |
gggttcgaacccagacacttgcactcatgtcgcagcggtgctaaccaccgtactacaacatgagggacaattaatcttgatttcaaacatgcgataatat |
49952884 |
T |
|
| Q |
318 |
atttgccacttc----------------aatttctttcctttatttactatacaaattacttttaattttcaagcaaaatcataacaatagtattaggca |
401 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49952883 |
atttgccacttcaatttcaaccttatcaaatttctttcctttatttactatacaaattacttttaattttcaagcaaaatcataacaatagtattaggca |
49952784 |
T |
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| Q |
402 |
tcatgatatagaataat |
418 |
Q |
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|||||||||||| |||| |
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| T |
49952783 |
tcatgatatagattaat |
49952767 |
T |
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