View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_333 (Length: 242)
Name: NF11324A_low_333
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_333 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 8061447 - 8061667
Alignment:
| Q |
22 |
aatttctctatattggatgctatatgatactcgtacttgtgaatcccctttaggacatgttgtcggagttctttgatatagaatgcacatctattatgaa |
121 |
Q |
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| T |
8061447 |
aatttctctatattggatgctatatgatactcgtactcgtgaatcccctttaggacattttgtcggagttctttgatatagaatgcacatctattatgaa |
8061546 |
T |
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| Q |
122 |
gcatatcattggatgatacttaacaaacaatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggcttagt |
221 |
Q |
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| T |
8061547 |
gcatatctttggatgatacttaacaaacaatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggcttagt |
8061646 |
T |
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| Q |
222 |
ttagtttgaatcacaaaaatg |
242 |
Q |
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| T |
8061647 |
ttagtttgaatcacaaaaatg |
8061667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 7930946 - 7930820
Alignment:
| Q |
115 |
ttatgaagcatatcattggatgatacttaacaaa-caatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataat |
213 |
Q |
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||||||||||| ||||| || |||||| ||||| ||| |||||||||| | || ||||||||||||||||| ||||||| ||||||||||||||| || |
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| T |
7930946 |
ttatgaagcatgtcattcaattatacttgacaaaacaacagtttcctaatt-taatatccacataaaagaaaagaagaaatggcttaaagttaagattat |
7930848 |
T |
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| Q |
214 |
ggcttagtttagttt-gaatcacaaaaa |
240 |
Q |
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| T |
7930847 |
ggcttagtttagtttagaatcacaaaaa |
7930820 |
T |
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