View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_334 (Length: 242)
Name: NF11324A_low_334
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_334 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29013532 - 29013767
Alignment:
| Q |
1 |
aagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaa |
100 |
Q |
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| T |
29013532 |
aagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaa |
29013631 |
T |
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| Q |
101 |
gagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtga |
200 |
Q |
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| T |
29013632 |
gagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtga |
29013731 |
T |
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| Q |
201 |
tgctcttactccacgagctgatattatgcatatttc |
236 |
Q |
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| T |
29013732 |
tgctcttactccacgagctgatattatgcatatttc |
29013767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29366220 - 29366455
Alignment:
| Q |
1 |
aagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366220 |
aagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaa |
29366319 |
T |
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| Q |
101 |
gagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtga |
200 |
Q |
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| T |
29366320 |
gagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtga |
29366419 |
T |
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| Q |
201 |
tgctcttactccacgagctgatattatgcatatttc |
236 |
Q |
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| T |
29366420 |
tgctcttactcctcgagctgatattaagcatatttc |
29366455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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